RNA–Protein interactions for RNA: ENST00000472490.1

BRCA1-211, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-211ENST00000472490 ZSCAN31Q96LW9 406 aaPredicted RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 TBC1D32Q96NH3 1257 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 TSEN34Q9BSV6 310 aaKnown RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 ZMYND12Q9H0C1 365 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 PDGFCQ9NRA1 345 aa16.29■□□□□ 0.2
BRCA1-211ENST00000472490 GNEQ9Y223 722 aaKnown RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 DDX49Q9Y6V7 483 aaKnown RBP16.29■□□□□ 0.2
BRCA1-211ENST00000472490 STK36Q9NRP7 1315 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 ZNFX1Q9P2E3 1918 aaKnown RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 MOXD2PA6NHM9 499 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 ADAMTS4O75173 837 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 TXNP10599 105 aaKnown RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 TGFB3P10600 412 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 SMPD1P17405 629 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 CST5P28325 142 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 BRDTQ58F21 947 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 PCNX4Q63HM2 1172 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 SEPT14Q6ZU15 432 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 GTF3C6Q969F1 213 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 UPF3AQ9H1J1 476 aaKnown RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 SH2B1Q9NRF2 756 aaPredicted RBP16.28■□□□□ 0.2
BRCA1-211ENST00000472490 PCDHA6Q9UN73 950 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 PCDHA8Q9Y5H6 950 aa16.28■□□□□ 0.2
BRCA1-211ENST00000472490 BRCA2P51587 3418 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 DYNC1LI2O43237 492 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-211ENST00000472490 COL6A1P12109 1028 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 MCM2P49736 904 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 MNX1P50219 401 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-211ENST00000472490 CPT1AP50416 773 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 NLRP5P59047 1200 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 NKX3-2P78367 333 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 UBE2SQ16763 222 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 GNASQ5JWF2 1037 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 GALNT17Q6IS24 598 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 TYW1BQ6NUM6 668 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 KLHDC9Q8NEP7 349 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 DIS3LQ8TF46 1054 aaKnown RBP16.27■□□□□ 0.2
BRCA1-211ENST00000472490 LENG1Q96BZ8 264 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-211ENST00000472490 SENP6Q9GZR1 1112 aaPredicted RBP16.27■□□□□ 0.2
BRCA1-211ENST00000472490 MRVI1Q9Y6F6 885 aa16.27■□□□□ 0.2
BRCA1-211ENST00000472490 ADCY6O43306 1168 aa16.26■□□□□ 0.19
BRCA1-211ENST00000472490 PPFIA3O75145 1194 aa16.26■□□□□ 0.19
BRCA1-211ENST00000472490 NLRX1Q86UT6 975 aa16.26■□□□□ 0.19
BRCA1-211ENST00000472490 REXO1Q8N1G1 1221 aaKnown RBP16.26■□□□□ 0.19
BRCA1-211ENST00000472490 NECAB1Q8N987 351 aa16.26■□□□□ 0.19
BRCA1-211ENST00000472490 CDHR1Q96JP9 859 aa16.26■□□□□ 0.19
BRCA1-211ENST00000472490 VPS54Q9P1Q0 977 aa16.26■□□□□ 0.19
BRCA1-211ENST00000472490 GH1P01241 217 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 CLK2P49760 499 aaKnown RBP16.25■□□□□ 0.19
BRCA1-211ENST00000472490 KCNA10Q16322 511 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 FSCN1Q16658 493 aaKnown RBP16.25■□□□□ 0.19
BRCA1-211ENST00000472490 CCDC62Q6P9F0 684 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 OR6J1Q8NGC5 347 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 IL31RAQ8NI17 732 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 DPF3Q92784 378 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 GLT1D1Q96MS3 346 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 INPP4AQ96PE3 977 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-211ENST00000472490 ORC3Q9UBD5 711 aaPredicted RBP16.25■□□□□ 0.19
BRCA1-211ENST00000472490 PHF24Q9UPV7 400 aa16.25■□□□□ 0.19
BRCA1-211ENST00000472490 MYH6P13533 1939 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 MAFGO15525 162 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 FIBPO43427 364 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 KPNA6O60684 536 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 CABYRO75952 493 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 LARGE1O95461 756 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 ACLYP53396 1101 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 LLPHQ9BRT6 129 aaKnown RBP16.24■□□□□ 0.19
BRCA1-211ENST00000472490 ANO3Q9BYT9 981 aa16.24■□□□□ 0.19
BRCA1-211ENST00000472490 DDX41Q9UJV9 622 aaKnown RBP16.24■□□□□ 0.19
BRCA1-211ENST00000472490 EVI5O60447 810 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 ASGR1P07306 291 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 ICAM3P32942 547 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 MRPS9P82933 396 aaKnown RBP16.23■□□□□ 0.19
BRCA1-211ENST00000472490 LAMC2Q13753 1193 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 LY6KQ17RY6 165 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 CCSAPQ6IQ19 270 aaPredicted RBP16.23■□□□□ 0.19
BRCA1-211ENST00000472490 DHX37Q8IY37 1157 aaKnown RBP16.23■□□□□ 0.19
BRCA1-211ENST00000472490 GIMAP8Q8ND71 665 aaPredicted RBP16.23■□□□□ 0.19
BRCA1-211ENST00000472490 GPRASP2Q96D09 838 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 STARD7Q9NQZ5 370 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 POLR3EQ9NVU0 708 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 RTEL1Q9NZ71 1219 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 PCDHA4Q9UN74 947 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 NR2E3Q9Y5X4 410 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 SMCHD1A6NHR9 2005 aa16.23■□□□□ 0.19
BRCA1-211ENST00000472490 ELP1O95163 1332 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 A0A1W2PQ45 241 aaPredicted RBP16.22■□□□□ 0.19
BRCA1-211ENST00000472490 A0A1W2PQY0 241 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 RGS20O76081 388 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 ARIH2O95376 493 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 CTDNEP1O95476 244 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 ZNF76P36508 570 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 SREBF1P36956 1147 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 HMGN5P82970 282 aaKnown RBP16.22■□□□□ 0.19
BRCA1-211ENST00000472490 MTMR1Q13613 665 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 TRIM29Q14134 588 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 NEDD9Q14511 834 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 C1orf53Q5VUE5 145 aa16.22■□□□□ 0.19
BRCA1-211ENST00000472490 JAKMIP3Q5VZ66 844 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms