RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ARL6IP4Q66PJ3 421 aaKnown RBP15.27■□□□□ 0.03
CCDC88A-211ENST00000471947 FAM13AO94988 1023 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 PLA2G4BP0C869 781 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 BAG6P46379 1132 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 RCAN1P53805 252 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 POLR2FP61218 127 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 UTP14CQ5TAP6 766 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 PCIF1Q9H4Z3 704 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 ASTN2O75129 1339 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 MFAP3LO75121 409 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 HARSP12081 509 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 SARSP49591 514 aaKnown RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 ECM1Q16610 540 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 DACT2Q5SW24 774 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 STRIP1Q5VSL9 837 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 BANK1Q8NDB2 785 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 AGBL1Q96MI9 1066 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 BPIFA3Q9BQP9 254 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 ARGLU1Q9NWB6 273 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 RWDD2AQ9UIY3 292 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 CCPG1Q9ULG6 757 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 DNM3Q9UQ16 869 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 EPN1Q9Y6I3 576 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 COL16A1Q07092 1604 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 ABCB11O95342 1321 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 YDJCA8MPS7 323 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 PNMA6AP0CW24 399 aaPredicted RBP15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 STAT2P52630 851 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 GRB10Q13322 594 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC102AQ96A19 550 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 ZNF408Q9H9D4 720 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 SMARCAL1Q9NZC9 954 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 NUP188Q5SRE5 1749 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 NWD2Q9ULI1 1742 aa15.26■□□□□ 0.03
CCDC88A-211ENST00000471947 H7C1D1 291 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 GAS7O60861 476 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 GYS2P54840 703 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 E2F4Q16254 413 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 MYOCDQ8IZQ8 938 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 OR8K1Q8NGG5 319 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 ZNF668Q96K58 619 aaPredicted RBP15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 FGFBP2Q9BYJ0 223 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 RABEP2Q9H5N1 569 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 SWAP70Q9UH65 585 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 LAMA4Q16363 1823 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 CTAGE9A4FU28 777 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 TMEM150BA6NC51 233 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 EGFRP00533 1210 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 RASA3Q14644 834 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 RRP1BQ14684 758 aaKnown RBP15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 NEK11Q8NG66 645 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC17Q96LX7 622 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 ADAM9Q13443 819 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC181Q5TID7 509 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 FLAD1Q8NFF5 587 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 PRR12Q9ULL5 1215 aa15.25■□□□□ 0.03
CCDC88A-211ENST00000471947 BICDL2A1A5D9 508 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 KIF2AO00139 706 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 STX10O60499 249 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 FGRP09769 529 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 SPP2Q13103 211 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 ARHGAP44Q17R89 818 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC93Q567U6 631 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC65Q8IXS2 484 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 ADSSL1Q8N142 457 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 PYM1Q9BRP8 204 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 LSM14BQ9BX40 385 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 ABCC6O95255 1503 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 CICQ96RK0 1608 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 TMEM179Q6ZVK1 233 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 MB21D1Q8N884 522 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 PROCA1Q8NCQ7 364 aaPredicted RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 PODXL2Q9NZ53 605 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 A0A1B0GTH6 734 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 MKRN3Q13064 507 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 PRPF4BQ13523 1007 aaKnown RBP15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 LRCH2Q5VUJ6 765 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 CYP26C1Q6V0L0 522 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 SH3GLB2Q9NR46 395 aa15.24■□□□□ 0.03
CCDC88A-211ENST00000471947 ZNF18P17022 549 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 CCNE1P24864 410 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ARHGAP27Q6ZUM4 889 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 SFR1Q86XK3 245 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ERMNQ8TAM6 284 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 HOOK2Q96ED9 719 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ERO1AQ96HE7 468 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 CENPHQ9H3R5 247 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ABHD10Q9NUJ1 306 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ZNF70Q9UC06 446 aaPredicted RBP15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 NR2F2P24468 414 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ERVK-24P63145 666 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 RASSF7Q02833 373 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 REXO1L1PQ8IX06 675 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 C4orf32Q8N8J7 132 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 JAKMIP2Q96AA8 810 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 MAP7D2Q96T17 732 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 GOLPH3Q9H4A6 298 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 ADGRG1Q9Y653 693 aa15.23■□□□□ 0.03
CCDC88A-211ENST00000471947 CCDC169A6NNP5 214 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms