RNA–Protein interactions for RNA: ENST00000471752.1

USP48-207, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 445 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-207ENST00000471752 DDX41Q9UJV9 622 aaKnown RBP9.43□□□□□ -0.9
USP48-207ENST00000471752 hCG_1642624A0A1W2PR95 340 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 HIP1O00291 1037 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 IFIT3O14879 490 aaKnown RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 GABBR2O75899 941 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 CABYRO75952 493 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 NR3C2P08235 984 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 MYCLP12524 364 aaPredicted RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 TROAPQ12815 778 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 GRM4Q14833 912 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 PPP2R5BQ15173 497 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 ASPRV1Q53RT3 343 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 FAM47CQ5HY64 1035 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 GDF6Q6KF10 455 aaPredicted RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 HOMER1Q86YM7 354 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP48-207ENST00000471752 MB21D2Q8IYB1 491 aaPredicted RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 TMEM199Q8N511 208 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 DNERQ8NFT8 737 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 SCFD2Q8WU76 684 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 HERVK_113Q902F9 699 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 MAP4K1Q92918 833 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 TIFAQ96CG3 184 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 UBAC1Q9BSL1 405 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 MTG1Q9BT17 334 aaPredicted RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 LRRC2Q9BYS8 371 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 KRT23Q9C075 422 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 LSG1Q9H089 658 aaKnown RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 PXMP2Q9NR77 195 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 CTNNA3Q9UI47 895 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 FARP1Q9Y4F1 1045 aaPredicted RBP9.42□□□□□ -0.9
USP48-207ENST00000471752 PCDHA1Q9Y5I3 950 aa9.42□□□□□ -0.9
USP48-207ENST00000471752 ABCB11O95342 1321 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 MROH7Q68CQ1 1323 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 EPOPA6NHQ4 379 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 TLR3O15455 904 aaKnown RBP9.41□□□□□ -0.9
USP48-207ENST00000471752 ZEB2O60315 1214 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 MMP3P08254 477 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 FOSL2P15408 326 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 RXRAP19793 462 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 HSD17B4P51659 736 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 CCDC85BQ15834 202 aaPredicted RBP9.41□□□□□ -0.9
USP48-207ENST00000471752 ARHGEF16Q5VV41 709 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 KRT40Q6A162 431 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 FCHSD1Q86WN1 690 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 NSUN6Q8TEA1 469 aaKnown RBP9.41□□□□□ -0.9
USP48-207ENST00000471752 RIOX1Q9H6W3 641 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 CERS4Q9HA82 394 aa9.41□□□□□ -0.9
USP48-207ENST00000471752 RBM8AQ9Y5S9 174 aaKnown RBP9.41□□□□□ -0.9
USP48-207ENST00000471752 ZBTB5O15062 677 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 PLEKHA8P1O95397 391 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 ZNF286BP0CG31 522 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 CPT1AP50416 773 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 CLCN6P51797 869 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 MRPS9P82933 396 aaKnown RBP9.4□□□□□ -0.9
USP48-207ENST00000471752 SEMA3FQ13275 785 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 STXBP2Q15833 593 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 CCDC178Q5BJE1 867 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 TRAF7Q6Q0C0 670 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 USP17L6PQ6QN14 398 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 VSIG10LQ86VR7 867 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 PDCD2LQ9BRP1 358 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 ALG1Q9BT22 464 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 AMNQ9BXJ7 453 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 CNNM2Q9H8M5 875 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 LY9Q9HBG7 655 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 POLR3EQ9NVU0 708 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 RTEL1Q9NZ71 1219 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 HDAC6Q9UBN7 1215 aa9.4□□□□□ -0.9
USP48-207ENST00000471752 MRPL11Q9Y3B7 192 aaKnown RBP9.4□□□□□ -0.9
USP48-207ENST00000471752 TET1Q8NFU7 2136 aa9.4□□□□□ -0.91
USP48-207ENST00000471752 SPDYE4A6NLX3 237 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 ZBBXA8MT70 800 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 SLC27A2O14975 620 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 ADAMTS3O15072 1205 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 EIF3JO75822 258 aaKnown RBP9.39□□□□□ -0.91
USP48-207ENST00000471752 GH1P01241 217 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 IQCF3P0C7M6 154 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 CD44P16070 742 aaKnown RBP9.39□□□□□ -0.91
USP48-207ENST00000471752 MBTPS1Q14703 1052 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 PGM5Q15124 567 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 PTGISQ16647 500 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 HSDL1Q3SXM5 330 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 TMEM67Q5HYA8 995 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 MYSM1Q5VVJ2 828 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 PSRC1Q6PGN9 363 aaPredicted RBP9.39□□□□□ -0.91
USP48-207ENST00000471752 CCDC82Q8N4S0 544 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 SRBD1Q8N5C6 995 aaKnown RBP9.39□□□□□ -0.91
USP48-207ENST00000471752 TCEANC2Q96MN5 208 aa9.39□□□□□ -0.91
USP48-207ENST00000471752 SCN5AQ14524 2016 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 SCN10AQ9Y5Y9 1956 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 LOC102724159A0A0B4J2E5 919 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 LCHNA4D1U4 455 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 NKRFO15226 690 aaKnown RBP eCLIP9.38□□□□□ -0.91
USP48-207ENST00000471752 PRC1O43663 620 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 NBNO60934 754 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 PSEN2P49810 448 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 GHRHRQ02643 423 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 WTAPQ15007 396 aa9.38□□□□□ -0.91
USP48-207ENST00000471752 PWP2Q15269 919 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms