RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 FBXO2Q9UK22 296 aaPredicted RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 DIS3Q9Y2L1 958 aaKnown RBP11.29□□□□□ -0.6
SF3A1-207ENST00000471342 KIF3AQ9Y496 699 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 DOCK3Q8IZD9 2030 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 BRCA2P51587 3418 aa11.29□□□□□ -0.6
SF3A1-207ENST00000471342 MSH4O15457 936 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 FCER1AP12319 257 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 XBP1P17861 261 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 EIF2AK2P19525 551 aaKnown RBP11.28□□□□□ -0.6
SF3A1-207ENST00000471342 ICAM3P32942 547 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 PSMC4P43686 418 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 ATP2C1P98194 919 aaPredicted RBP11.28□□□□□ -0.6
SF3A1-207ENST00000471342 SP3Q02447 781 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 TRIM32Q13049 653 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 ITGB3BPQ13352 177 aaPredicted RBP11.28□□□□□ -0.6
SF3A1-207ENST00000471342 SLC39A14Q15043 492 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 ZNF174Q15697 407 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 FOXD4L6Q3SYB3 417 aaPredicted RBP11.28□□□□□ -0.6
SF3A1-207ENST00000471342 ANO1Q5XXA6 986 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 MCTP1Q6DN14 999 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 FOXD4L3Q6VB84 417 aaPredicted RBP11.28□□□□□ -0.6
SF3A1-207ENST00000471342 NEK8Q86SG6 692 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 CD99L2Q8TCZ2 262 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 BICD2Q8TD16 824 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 MXRA8Q9BRK3 442 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 WDR11Q9BZH6 1224 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 DAXXQ9UER7 740 aaPredicted RBP11.28□□□□□ -0.6
SF3A1-207ENST00000471342 PFASO15067 1338 aa11.28□□□□□ -0.6
SF3A1-207ENST00000471342 SPATA31C2B4DYI2 1134 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 GADD45BO75293 160 aaPredicted RBP11.27□□□□□ -0.61
SF3A1-207ENST00000471342 PSMD10O75832 226 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 ZNF865P0CJ78 1059 aaPredicted RBP11.27□□□□□ -0.61
SF3A1-207ENST00000471342 HSPA8P11142 646 aaKnown RBP11.27□□□□□ -0.61
SF3A1-207ENST00000471342 PRKCZQ05513 592 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 PTGDRQ13258 359 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 TRIM29Q14134 588 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 RILPL1Q5EBL4 403 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 TTC38Q5R3I4 469 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 USP49Q70CQ1 688 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 NIPA1Q7RTP0 329 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 ANKRD35Q8N283 1001 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 NSUN6Q8TEA1 469 aaKnown RBP11.27□□□□□ -0.61
SF3A1-207ENST00000471342 TRIB2Q92519 343 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 IWS1Q96ST2 819 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 NUDT12Q9BQG2 462 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 MMTAG2Q9BU76 263 aaKnown RBP11.27□□□□□ -0.61
SF3A1-207ENST00000471342 JADE2Q9NQC1 790 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 PDGFCQ9NRA1 345 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 LMBRD1Q9NUN5 540 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 VAV3Q9UKW4 847 aa11.27□□□□□ -0.61
SF3A1-207ENST00000471342 A0A087X0B3 334 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 FAM237AA0A1B0GTK4 181 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 POTEB2H3BUK9 544 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 CTAGE5O15320 804 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 FOXN1O15353 648 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 YEATS4O95619 227 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 XRCC5P13010 732 aaKnown RBP11.26□□□□□ -0.61
SF3A1-207ENST00000471342 KCNA2P16389 499 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 FLT3LGP49771 235 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 CCNA1P78396 465 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 MAP2K1Q02750 393 aaPredicted RBP11.26□□□□□ -0.61
SF3A1-207ENST00000471342 KCTD2Q14681 263 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 SAFBQ15424 915 aaKnown RBP eCLIP11.26□□□□□ -0.61
SF3A1-207ENST00000471342 LETM2Q2VYF4 491 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 CEP55Q53EZ4 464 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 MAP3K21Q5TCX8 1036 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 OLFML2BQ68BL8 750 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 MCTP2Q6DN12 878 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 SHC4Q6S5L8 630 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 SLC5A5Q92911 643 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 CLIC6Q96NY7 704 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 PCDHA7Q9UN72 937 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 MYH7BA7E2Y1 1941 aa11.26□□□□□ -0.61
SF3A1-207ENST00000471342 LOC102724159A0A0B4J2E5 919 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 CCDC194A0A1B0GVG4 234 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 EML1O00423 815 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 ECM2O94769 699 aaPredicted RBP11.25□□□□□ -0.61
SF3A1-207ENST00000471342 STBD1O95210 358 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 CCNE2O96020 404 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 IRX5P78411 483 aaPredicted RBP11.25□□□□□ -0.61
SF3A1-207ENST00000471342 IRF5Q13568 498 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 PWP2Q15269 919 aaKnown RBP11.25□□□□□ -0.61
SF3A1-207ENST00000471342 ECM1Q16610 540 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 PRAMEF19Q5SWL8 479 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 ATL3Q6DD88 541 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 XRRA1Q6P2D8 792 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 ARMCX2Q7L311 632 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 UIMC1Q96RL1 719 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 GOLPH3LQ9H4A5 285 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 AGO4Q9HCK5 861 aaKnown RBP11.25□□□□□ -0.61
SF3A1-207ENST00000471342 KCNH7Q9NS40 1196 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 SRRDQ9UH36 339 aa11.25□□□□□ -0.61
SF3A1-207ENST00000471342 RBBP6Q7Z6E9 1792 aaKnown RBP11.25□□□□□ -0.61
SF3A1-207ENST00000471342 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 SPDYE3A6NKU9 549 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 PPP6R2O75170 966 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 EIF3JO75822 258 aaKnown RBP11.24□□□□□ -0.61
SF3A1-207ENST00000471342 ATP2B1P20020 1258 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 CYP2C19P33261 490 aa11.24□□□□□ -0.61
SF3A1-207ENST00000471342 MCM7P33993 719 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms