RNA–Protein interactions for RNA: ENST00000466732.2

VPS13D-203, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 377 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-203ENST00000466732 NTRK3Q16288 839 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 MROH9Q5TGP6 573 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 LCNL1Q6ZST4 164 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 RIOX2Q8IUF8 465 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 PMFBP1Q8TBY8 1022 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 TMEM169Q96HH4 297 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 CHAMP1Q96JM3 812 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 DEPDC7Q96QD5 511 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 RNF38Q9H0F5 515 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 GPR27Q9NS67 375 aa6.06□□□□□ -1.44
VPS13D-203ENST00000466732 FAM221BA6H8Z2 402 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 H7BY64 318 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 SGSM2O43147 1006 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 ADCY3O60266 1144 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 DIAPH1O60610 1272 aaKnown RBP6.05□□□□□ -1.44
VPS13D-203ENST00000466732 MSCO60682 206 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 NCAM1P13591 858 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 PMLP29590 882 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 MC3RP41968 323 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 SOGA3Q5TF21 947 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 CNKSR3Q6P9H4 555 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 RSPO2Q6UXX9 243 aaPredicted RBP6.05□□□□□ -1.44
VPS13D-203ENST00000466732 SPOCD1Q6ZMY3 1216 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 LRP10Q7Z4F1 713 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 AMIGO3Q86WK7 504 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 FAM129CQ86XR2 697 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 SIAH1Q8IUQ4 282 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 PHF20Q9BVI0 1012 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 AP5M1Q9H0R1 490 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 CLDND1Q9NY35 253 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 SNTG2Q9NY99 539 aa6.05□□□□□ -1.44
VPS13D-203ENST00000466732 BLACEA4D250 179 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 LIMS1P48059 325 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 SLC6A11P48066 632 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 IFRD2Q12894 506 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-203ENST00000466732 KCNT2Q6UVM3 1135 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 ZBTB38Q8NAP3 1195 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-203ENST00000466732 DCAF4Q8WV16 495 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 SEC14L1Q92503 715 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 DACT3Q96B18 629 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-203ENST00000466732 DNAJC2Q99543 621 aaKnown RBP6.04□□□□□ -1.44
VPS13D-203ENST00000466732 KRTAP9-9Q9BYP9 154 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 KRTAP9-4Q9BYQ2 154 aa6.04□□□□□ -1.44
VPS13D-203ENST00000466732 COA3Q9Y2R0 106 aaPredicted RBP6.04□□□□□ -1.44
VPS13D-203ENST00000466732 BTBD11A6QL63 1104 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 AFF3P51826 1226 aaKnown RBP6.03□□□□□ -1.44
VPS13D-203ENST00000466732 FOXO4P98177 505 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 TCERG1LQ5VWI1 586 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 FOXB2Q5VYV0 432 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 TMEM151BQ8IW70 566 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 MKL1Q969V6 931 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 PWWP2AQ96N64 755 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 SRPK1Q96SB4 655 aaKnown RBP6.03□□□□□ -1.44
VPS13D-203ENST00000466732 CDIP1Q9H305 208 aa6.03□□□□□ -1.44
VPS13D-203ENST00000466732 KDM2BQ8NHM5 1336 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 FAM153BP0C7A2 387 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 FAM209AQ5JX71 171 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 STYK1Q6J9G0 422 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 SCUBE1Q8IWY4 988 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 CPA5Q8WXQ8 436 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 CDC6Q99741 560 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 PPARGC1AQ9UBK2 798 aaKnown RBP6.02□□□□□ -1.45
VPS13D-203ENST00000466732 PALD1Q9ULE6 856 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 FAN1Q9Y2M0 1017 aa6.02□□□□□ -1.45
VPS13D-203ENST00000466732 TRBV23-1A0A0A0MS06 115 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 PLA2G1BP04054 148 aaKnown RBP6.01□□□□□ -1.45
VPS13D-203ENST00000466732 GPR85P60893 370 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 CACNB2Q08289 660 aaPredicted RBP6.01□□□□□ -1.45
VPS13D-203ENST00000466732 LBX2Q6XYB7 198 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 MILR1Q7Z6M3 343 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 B3GNT8Q7Z7M8 397 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 SMARCC2Q8TAQ2 1214 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 DNAJC7Q99615 494 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 ZFYVE21Q9BQ24 234 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 JAM3Q9BX67 310 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 OSBPL2Q9H1P3 480 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 EPB41L1Q9H4G0 881 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 ZNF652Q9Y2D9 606 aa6.01□□□□□ -1.45
VPS13D-203ENST00000466732 ASXL2Q76L83 1435 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 HGSO14964 777 aaPredicted RBP6□□□□□ -1.45
VPS13D-203ENST00000466732 DGKIO75912 1065 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 SUMO1P63165 101 aaKnown RBP6□□□□□ -1.45
VPS13D-203ENST00000466732 CHRNA2Q15822 529 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 LONRF2Q1L5Z9 754 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 KIZQ2M2Z5 673 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 VMACQ2NL98 169 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 FBLN7Q53RD9 439 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 EMC4Q5J8M3 183 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 STEAP3Q658P3 488 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 ETV3LQ6ZN32 361 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 DPH6Q7L8W6 267 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 MIB1Q86YT6 1006 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 IFNL3Q8IZI9 196 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 NLGN1Q8N2Q7 840 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6□□□□□ -1.45
VPS13D-203ENST00000466732 EXOC2Q96KP1 924 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 DRC1Q96MC2 740 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 IPO9Q96P70 1041 aaKnown RBP6□□□□□ -1.45
VPS13D-203ENST00000466732 PMF1-BGLAPU3KQ54 211 aa6□□□□□ -1.45
VPS13D-203ENST00000466732 TADA3O75528 432 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms