RNA–Protein interactions for RNA: ENST00000466579.1

SDCCAG3-208, Transcript of Serologically defined colon cancer antigen 3, human

TSL 1 (best)

Gene SDCCAG3, Length 496 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SDCCAG3-208	ENST00000466579	SCRN1	Q12765	414 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	TTLL4	Q14679	1199 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	TMEM63B	Q5T3F8	832 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	PCNX4	Q63HM2	1172 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	FCHSD1	Q86WN1	690 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	PCSK9	Q8NBP7	692 aa	Known RBP	10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SMARCC2	Q8TAQ2	1214 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	PHKB	Q93100	1093 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SPC25	Q9HBM1	224 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SH3GLB2	Q9NR46	395 aa		10.89	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	STK36	Q9NRP7	1315 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SMCO2	A6NFE2	343 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	FOS	P01100	380 aa	Predicted RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	TGFB3	P10600	412 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CCND2	P30279	289 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ICAM3	P32942	547 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ADCY7	P51828	1080 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ACLY	P53396	1101 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	KCNA10	Q16322	511 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ME3	Q16798	604 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	KCNV1	Q6PIU1	500 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CPLX2	Q6PUV4	134 aa	Known RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CCDC12	Q8WUD4	166 aa	Predicted RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	GTF3C6	Q969F1	213 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	EMID1	Q96A84	441 aa	Predicted RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	TBC1D32	Q96NH3	1257 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	INPP4A	Q96PE3	977 aa	Predicted RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SLC26A6	Q9BXS9	759 aa		10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SLK	Q9H2G2	1235 aa	Predicted RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	DDX41	Q9UJV9	622 aa	Known RBP	10.88	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ELP1	O95163	1332 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SCN10A	Q9Y5Y9	1956 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579		A0A1W2PQ45	241 aa	Predicted RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579		A0A1W2PQY0	241 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579		A6NJR5	290 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	DYNC1LI2	O43237	492 aa	Predicted RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CDKL5	O76039	1030 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	DEXI	O95424	95 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	LARGE1	O95461	756 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CTDNEP1	O95476	244 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	C6orf222	P0C671	652 aa	Predicted RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	TXN	P10599	105 aa	Known RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	PTGS1	P23219	599 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	IRX5	P78411	483 aa	Predicted RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	AKAP17A	Q02040	695 aa	Known RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ARHGAP1	Q07960	439 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SSRP1	Q08945	709 aa	Known RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	STK3	Q13188	491 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	AP3B2	Q13367	1082 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	FSCN1	Q16658	493 aa	Known RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	UBE2S	Q16763	222 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	LRRC26	Q2I0M4	334 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	GNAS	Q5JWF2	1037 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	MCTP2	Q6DN12	878 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SLC39A5	Q6ZMH5	540 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	TRIM22	Q8IYM9	498 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CRYGN	Q8WXF5	182 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	BACH2	Q9BYV9	841 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SENP6	Q9GZR1	1112 aa	Predicted RBP	10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	AP5M1	Q9H0R1	490 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	PCDHA6	Q9UN73	950 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	PCDHA8	Q9Y5H6	950 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	MYH7B	A7E2Y1	1941 aa		10.87	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SPDYE3	A6NKU9	549 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SPATA31C2	B4DYI2	1134 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CPLX1	O14810	134 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CABYR	O75952	493 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ASGR1	P07306	291 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	MYCL	P12524	364 aa	Predicted RBP	10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	HOXD8	P13378	290 aa	Predicted RBP	10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	GNA11	P29992	359 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SREBF1	P36956	1147 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CPT1A	P50416	773 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ST3GAL1	Q11201	340 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SEMA3F	Q13275	785 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	RABEP1	Q15276	862 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	NPY5R	Q15761	445 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SEPT14	Q6ZU15	432 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	NOL8	Q76FK4	1167 aa	Known RBP	10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SLC43A3	Q8NBI5	491 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	DAGLB	Q8NCG7	672 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CCDC148	Q8NFR7	591 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	OR6J1	Q8NGC5	347 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	COPS5	Q92905	334 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	SEZ6L	Q9BYH1	1024 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	UPF2	Q9HAU5	1272 aa	Known RBP	10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	C6orf50	Q9HD87	102 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	LIMCH1	Q9UPQ0	1083 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	UBIAD1	Q9Y5Z9	338 aa		10.86	□□□□□ -0.67
SDCCAG3-208	ENST00000466579		M0R2N6	131 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ADAMTS3	O15072	1205 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	FIBP	O43427	364 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ZEB2	O60315	1214 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	KPNA6	O60684	536 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	GH1	P01241	217 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	MYCN	P04198	464 aa	Predicted RBP	10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CYP3A4	P08684	503 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	FDPS	P14324	419 aa	Known RBP	10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	ITGB5	P18084	799 aa		10.85	□□□□□ -0.67
SDCCAG3-208	ENST00000466579	CDK7	P50613	346 aa		10.85	□□□□□ -0.67

Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms