RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 LRRC8DQ7L1W4 858 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 IFNL3Q8IZI9 196 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 CCDC155Q8N6L0 562 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 AFAP1L1Q8TED9 768 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 CEP95Q96GE4 821 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 SEC62Q99442 399 aaKnown RBP11.54□□□□□ -0.56
USP39-212ENST00000465514 IRF2BPLQ9H1B7 796 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 ZNF287Q9HBT7 754 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 VTA1Q9NP79 307 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 TLR9Q9NR96 1032 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 RNF146Q9NTX7 359 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 MTMR4Q9NYA4 1195 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 FEM1BQ9UK73 627 aa11.54□□□□□ -0.56
USP39-212ENST00000465514 ABHD14A-ACY1A0A1B0GW23 586 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 NBNO60934 754 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 TTLL1O95922 423 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 CXCL10P02778 98 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 SELPP16109 830 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 CHMP4BP1P59074 171 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 ZXDAP98168 799 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 DLX2Q07687 328 aaPredicted RBP11.53□□□□□ -0.56
USP39-212ENST00000465514 GPM6BQ13491 265 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 PTGISQ16647 500 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 LRRC47Q8N1G4 583 aaKnown RBP11.53□□□□□ -0.56
USP39-212ENST00000465514 OR6J1Q8NGC5 347 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 CAGE1Q8TC20 777 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 CTAGE1Q96RT6 745 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 FSD1Q9BTV5 496 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 INSL6Q9Y581 213 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 TTC41PQ6P2S7 1318 aa11.53□□□□□ -0.56
USP39-212ENST00000465514 H3BNC9 293 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 TSPY3P0CV98 308 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 TSPY8P0CW00 308 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 PTPN11Q06124 597 aaPredicted RBP11.52□□□□□ -0.57
USP39-212ENST00000465514 PDE4BQ07343 736 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 SMAD4Q13485 552 aaKnown RBP11.52□□□□□ -0.57
USP39-212ENST00000465514 SLFN13Q68D06 897 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 GMCL1P1Q8NEA9 526 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 NEDD1Q8NHV4 660 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 PI4K2BQ8TCG2 481 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 OTUD7AQ8TE49 926 aaPredicted RBP11.52□□□□□ -0.57
USP39-212ENST00000465514 DHX38Q92620 1227 aaKnown RBP11.52□□□□□ -0.57
USP39-212ENST00000465514 PURBQ96QR8 312 aaKnown RBP11.52□□□□□ -0.57
USP39-212ENST00000465514 WDR11Q9BZH6 1224 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 NACAP1Q9BZK3 213 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 SYNPO2Q9UMS6 1093 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 TRPC6Q9Y210 931 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 PCDHB15Q9Y5E8 787 aa11.52□□□□□ -0.57
USP39-212ENST00000465514 FRYLO94915 3013 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 TMEM232C9JQI7 657 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 EFCAB14O75071 495 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 KDM4AO75164 1064 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 TBX10O75333 385 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 SLC3A2P08195 630 aaKnown RBP11.51□□□□□ -0.57
USP39-212ENST00000465514 BMP3P12645 472 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 AVPR2P30518 371 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 HTRA4P83105 476 aaPredicted RBP11.51□□□□□ -0.57
USP39-212ENST00000465514 TFAP4Q01664 338 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 PPARAQ07869 468 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 IKBKEQ14164 716 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 CTC1Q2NKJ3 1217 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 ZMYM1Q5SVZ6 1142 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.51□□□□□ -0.57
USP39-212ENST00000465514 SAMD11Q96NU1 681 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 NAPBQ9H115 298 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 CYP39A1Q9NYL5 469 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 ISY1Q9ULR0 285 aaKnown RBP11.51□□□□□ -0.57
USP39-212ENST00000465514 CFAP47Q6ZTR5 3102 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 RAD50Q92878 1312 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 ACACBO00763 2458 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 PLIN4Q96Q06 1357 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 BAHCC1Q9P281 2608 aa11.51□□□□□ -0.57
USP39-212ENST00000465514 EP300Q09472 2414 aaPredicted RBP11.5□□□□□ -0.57
USP39-212ENST00000465514 MED19A0JLT2 244 aaPredicted RBP11.5□□□□□ -0.57
USP39-212ENST00000465514 NCK2O43639 380 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 CKBP12277 381 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 SIGLEC14Q08ET2 396 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 HYAL1Q12794 435 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 BRDTQ58F21 947 aaPredicted RBP11.5□□□□□ -0.57
USP39-212ENST00000465514 GDF6Q6KF10 455 aaPredicted RBP11.5□□□□□ -0.57
USP39-212ENST00000465514 MYOCDQ8IZQ8 938 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 MORC4Q8TE76 937 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 CHMP4CQ96CF2 233 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 ASIC4Q96FT7 647 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 TRERF1Q96PN7 1200 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 CD207Q9UJ71 328 aa11.5□□□□□ -0.57
USP39-212ENST00000465514 HAX1O00165 279 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 PARNO95453 639 aaKnown RBP11.49□□□□□ -0.57
USP39-212ENST00000465514 AMHP03971 560 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 FDX1P10109 184 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 ALAS1P13196 640 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 MCCP23508 829 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 STAT2P52630 851 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 RBL2Q08999 1139 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 IKQ13123 557 aaPredicted RBP11.49□□□□□ -0.57
USP39-212ENST00000465514 MUM1L1Q5H9M0 696 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 FBXO11Q86XK2 927 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 TMEM192Q8IY95 271 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 CHURC1Q8WUH1 139 aa11.49□□□□□ -0.57
USP39-212ENST00000465514 STAG1Q8WVM7 1258 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms