RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 USH1GQ495M9 461 aa16.99■□□□□ 0.31
SMC1A-204ENST00000463684 PTCRAQ6ISU1 281 aaPredicted RBP16.99■□□□□ 0.31
SMC1A-204ENST00000463684 FBXO22Q8NEZ5 403 aa16.99■□□□□ 0.31
SMC1A-204ENST00000463684 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.99■□□□□ 0.31
SMC1A-204ENST00000463684 DHX38Q92620 1227 aaKnown RBP16.99■□□□□ 0.31
SMC1A-204ENST00000463684 KAT2BQ92831 832 aa16.99■□□□□ 0.31
SMC1A-204ENST00000463684 KATNAL1Q9BW62 490 aa16.99■□□□□ 0.31
SMC1A-204ENST00000463684 RCAN3Q9UKA8 241 aa16.99■□□□□ 0.31
SMC1A-204ENST00000463684 LCTP09848 1927 aa16.99■□□□□ 0.31
SMC1A-204ENST00000463684 ARHGAP1Q07960 439 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 PTK7Q13308 1070 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 ALX1Q15699 326 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 STXBP2Q15833 593 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 C20orf194Q5TEA3 1177 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 VPS53Q5VIR6 699 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 NSUN6Q8TEA1 469 aaKnown RBP16.98■□□□□ 0.31
SMC1A-204ENST00000463684 TTC14Q96N46 770 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 ALG1Q9BT22 464 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 MAF1Q9H063 256 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 HDAC6Q9UBN7 1215 aa16.98■□□□□ 0.31
SMC1A-204ENST00000463684 TANC1Q9C0D5 1861 aa16.97■□□□□ 0.31
SMC1A-204ENST00000463684 IL9P15248 144 aa16.97■□□□□ 0.31
SMC1A-204ENST00000463684 PSEN2P49810 448 aa16.97■□□□□ 0.31
SMC1A-204ENST00000463684 PTPROQ16827 1216 aa16.97■□□□□ 0.31
SMC1A-204ENST00000463684 TCTN1Q2MV58 587 aa16.97■□□□□ 0.31
SMC1A-204ENST00000463684 IWS1Q96ST2 819 aa16.97■□□□□ 0.31
SMC1A-204ENST00000463684 GRXCR2A6NFK2 248 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 AMHP03971 560 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 GPATCH4Q5T3I0 446 aaKnown RBP16.96■□□□□ 0.31
SMC1A-204ENST00000463684 ZNF618Q5T7W0 954 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 MCF2L2Q86YR7 1114 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 MRPL38Q96DV4 380 aaKnown RBP16.96■□□□□ 0.31
SMC1A-204ENST00000463684 TAAR1Q96RJ0 339 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 C17orf80Q9BSJ5 609 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 HELLSQ9NRZ9 838 aa16.96■□□□□ 0.31
SMC1A-204ENST00000463684 LGR5O75473 907 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 FGAP02671 866 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 SNHG28P0DPA3 235 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 MX1P20591 662 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 LAMC2Q13753 1193 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 MFSD10Q14728 455 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 KIAA0753Q2KHM9 967 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 DHX37Q8IY37 1157 aaKnown RBP16.95■□□□□ 0.3
SMC1A-204ENST00000463684 MIER1Q8N108 512 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 TBC1D5Q92609 795 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 SAMD11Q96NU1 681 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 RMDN3Q96TC7 470 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 DDX41Q9UJV9 622 aaKnown RBP16.95■□□□□ 0.3
SMC1A-204ENST00000463684 FAM50BQ9Y247 325 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 ABCB11O95342 1321 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 EMSYQ7Z589 1322 aa16.95■□□□□ 0.3
SMC1A-204ENST00000463684 COL4A4P53420 1690 aaPredicted RBP16.94■□□□□ 0.3
SMC1A-204ENST00000463684 GOLGA8HP0CJ92 632 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 ARHGEF16Q5VV41 709 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.94■□□□□ 0.3
SMC1A-204ENST00000463684 MFSD6Q6ZSS7 791 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 EP400NLQ6ZTU2 488 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 MYOCDQ8IZQ8 938 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 NEK9Q8TD19 979 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 SYTL5Q8TDW5 730 aaPredicted RBP16.94■□□□□ 0.3
SMC1A-204ENST00000463684 OTUD7AQ8TE49 926 aaPredicted RBP16.94■□□□□ 0.3
SMC1A-204ENST00000463684 EMID1Q96A84 441 aaPredicted RBP16.94■□□□□ 0.3
SMC1A-204ENST00000463684 UBA5Q9GZZ9 404 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 MRVI1Q9Y6F6 885 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 TET1Q8NFU7 2136 aa16.94■□□□□ 0.3
SMC1A-204ENST00000463684 H3BQ06 376 aaPredicted RBP16.93■□□□□ 0.3
SMC1A-204ENST00000463684 DCXO43602 365 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 EIF3JO75822 258 aaKnown RBP16.93■□□□□ 0.3
SMC1A-204ENST00000463684 F2P00734 622 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 PCP11498 1178 aaKnown RBP16.93■□□□□ 0.3
SMC1A-204ENST00000463684 MRE11P49959 708 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 HTRA4P83105 476 aaPredicted RBP16.93■□□□□ 0.3
SMC1A-204ENST00000463684 TRIM71Q2Q1W2 868 aaKnown RBP16.93■□□□□ 0.3
SMC1A-204ENST00000463684 TIGD5Q53EQ6 642 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 DBF4BQ8NFT6 615 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 PPTC7Q8NI37 304 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 EVI5LQ96CN4 794 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 KCNH6Q9H252 994 aa16.93■□□□□ 0.3
SMC1A-204ENST00000463684 ZBTB47Q9UFB7 747 aaPredicted RBP16.93■□□□□ 0.3
SMC1A-204ENST00000463684 RSPH10B2B2RC85 870 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 HAS3O00219 553 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 RSPH10BP0C881 870 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 ZNF286BP0CG31 522 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 ZNF200P98182 395 aaPredicted RBP16.92■□□□□ 0.3
SMC1A-204ENST00000463684 MBTPS1Q14703 1052 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 CDC37Q16543 378 aaPredicted RBP16.92■□□□□ 0.3
SMC1A-204ENST00000463684 MCMDC2Q4G0Z9 681 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 EPC2Q52LR7 807 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 TRAF7Q6Q0C0 670 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 BANK1Q8NDB2 785 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 YME1L1Q96TA2 773 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 CPVLQ9H3G5 476 aa16.92■□□□□ 0.3
SMC1A-204ENST00000463684 MRPL11Q9Y3B7 192 aaKnown RBP16.92■□□□□ 0.3
SMC1A-204ENST00000463684 H3BNC9 293 aa16.91■□□□□ 0.3
SMC1A-204ENST00000463684 PPFIA4O75335 1185 aa16.91■□□□□ 0.3
SMC1A-204ENST00000463684 EIF2AK2P19525 551 aaKnown RBP16.91■□□□□ 0.3
SMC1A-204ENST00000463684 THPOP40225 353 aa16.91■□□□□ 0.3
SMC1A-204ENST00000463684 HAND2P61296 217 aa16.91■□□□□ 0.3
SMC1A-204ENST00000463684 GPM6BQ13491 265 aa16.91■□□□□ 0.3
SMC1A-204ENST00000463684 SP7Q8TDD2 431 aaPredicted RBP16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms