RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 X6R8D5 127 aa5.97□□□□□ -1.45
VPS41-210ENST00000462429 ANKRD62A6NC57 917 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 NPTXRO95502 500 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 EFEMP2O95967 443 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 GLI1P08151 1106 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 ST5P78524 1137 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 KCNMB1Q16558 191 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 FYB2Q5VWT5 728 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 ZNF662Q6ZS27 426 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 DDX53Q86TM3 631 aaKnown RBP5.96□□□□□ -1.46
VPS41-210ENST00000462429 ZSWIM9Q86XI8 627 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 RIOX2Q8IUF8 465 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 PCDH19Q8TAB3 1148 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 FBXW5Q969U6 566 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 SLC6A17Q9H1V8 727 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 EPB41L1Q9H4G0 881 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 IPPKQ9H8X2 491 aa5.96□□□□□ -1.46
VPS41-210ENST00000462429 PPARGC1AQ9UBK2 798 aaKnown RBP5.96□□□□□ -1.46
VPS41-210ENST00000462429 WNT9AO14904 365 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 SRGAP3O43295 1099 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 DGKIO75912 1065 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 MPOP05164 745 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 SRGAP2CP0DJJ0 459 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 MYCLP1P12525 358 aaPredicted RBP5.95□□□□□ -1.46
VPS41-210ENST00000462429 NCLP19338 710 aaKnown RBP5.95□□□□□ -1.46
VPS41-210ENST00000462429 MASP1P48740 699 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 GALK1P51570 392 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 IRAK1P51617 712 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 ERVFRD-1P60508 538 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 SPIRE1Q08AE8 756 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 WWC2Q6AWC2 1192 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 CNNM4Q6P4Q7 775 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 UBE2R2Q712K3 238 aaPredicted RBP5.95□□□□□ -1.46
VPS41-210ENST00000462429 LRRTM3Q86VH5 581 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 DCP2Q8IU60 420 aaKnown RBP5.95□□□□□ -1.46
VPS41-210ENST00000462429 NETO2Q8NC67 525 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 INTS4Q96HW7 963 aaKnown RBP5.95□□□□□ -1.46
VPS41-210ENST00000462429 KCNJ15Q99712 375 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 CDIP1Q9H305 208 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 SPC25Q9HBM1 224 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 TNFRSF12AQ9NP84 129 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 NUDT5Q9UKK9 219 aa5.95□□□□□ -1.46
VPS41-210ENST00000462429 DNAJC6O75061 913 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 NTRK1P04629 796 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 CYBBP04839 570 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 GLI4P10075 376 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 GNAT1P11488 350 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 JUNBP17275 347 aaPredicted RBP5.94□□□□□ -1.46
VPS41-210ENST00000462429 CHRNA2Q15822 529 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 ADGRF1Q5T601 910 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 ZCCHC8Q6NZY4 707 aaKnown RBP5.94□□□□□ -1.46
VPS41-210ENST00000462429 PAQR3Q6TCH7 311 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 FILIP1Q7Z7B0 1213 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 AHI1Q8N157 1196 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 PPM1KQ8N3J5 372 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 DDX1Q92499 740 aaKnown RBP5.94□□□□□ -1.46
VPS41-210ENST00000462429 JAM3Q9BX67 310 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 AP5M1Q9H0R1 490 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 FBLN5Q9UBX5 448 aa5.94□□□□□ -1.46
VPS41-210ENST00000462429 CCDC66A2RUB6 948 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 OR14I1A6ND48 311 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 KRIT1O00522 736 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 PDE8AO60658 829 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 MAFKO60675 156 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 PAPLNO95428 1278 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 DBHP09172 617 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 JMJD7P0C870 316 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 ITGB5P18084 799 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 POU3F2P20265 443 aaPredicted RBP5.93□□□□□ -1.46
VPS41-210ENST00000462429 PDE6BP35913 854 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 SLC6A11P48066 632 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 DNM2P50570 870 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 NEK4P51957 841 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 TMEM62Q0P6H9 643 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 ZNF460Q14592 562 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 NR1I3Q14994 352 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 CRY1Q16526 586 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 CFAP100Q494V2 611 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 C16orf59Q7L2K0 433 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 IRF2BP1Q8IU81 584 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 SEC14L1Q92503 715 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 TARS2Q9BW92 718 aaKnown RBP5.93□□□□□ -1.46
VPS41-210ENST00000462429 CELF4Q9BZC1 486 aaKnown RBP5.93□□□□□ -1.46
VPS41-210ENST00000462429 CATSPERZQ9NTU4 200 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 SAMD15Q9P1V8 674 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 DBR1Q9UK59 544 aaKnown RBP5.93□□□□□ -1.46
VPS41-210ENST00000462429 MAPRE3Q9UPY8 281 aa5.93□□□□□ -1.46
VPS41-210ENST00000462429 A0A087X0B3 334 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 PYGMP11217 842 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 SOX5P35711 763 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 RAB3GAP1Q15042 981 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 PIK3R6Q5UE93 754 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 OLFML2BQ68BL8 750 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 OTOP3Q7RTS5 596 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 ANKLE2Q86XL3 938 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 THNSL2Q86YJ6 484 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 IGSF22Q8N9C0 903 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.92□□□□□ -1.46
VPS41-210ENST00000462429 CHAC2Q8WUX2 184 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 FAM168AQ92567 244 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms