RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PAWRQ96IZ0 340 aaKnown RBP26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 AIFM3Q96NN9 605 aa26.18■■□□□ 1.78
CCDC28B-203ENST00000461819 FOSP01100 380 aaPredicted RBP26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 NLRP5P59047 1200 aa26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 AP3B2Q13367 1082 aa26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 TTLL4Q14679 1199 aa26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 REXO1Q8N1G1 1221 aaKnown RBP26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 NSUN7Q8NE18 718 aaKnown RBP26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 BICD2Q8TD16 824 aa26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 WASF1Q92558 559 aa26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 AP5M1Q9H0R1 490 aa26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 MKI67P46013 3256 aaKnown RBP26.17■■□□□ 1.78
CCDC28B-203ENST00000461819 ADAMTS4O75173 837 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 C6orf222P0C671 652 aaPredicted RBP26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 TXNP10599 105 aaKnown RBP26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 XBP1P17861 261 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 MLLT1Q03111 559 aaPredicted RBP26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 ST3GAL1Q11201 340 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 DUSP28Q4G0W2 176 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 PCNX4Q63HM2 1172 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 ZFP91Q96JP5 570 aaPredicted RBP26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 PGBD1Q96JS3 809 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 C11orf49Q9H6J7 331 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 TMEM260Q9NX78 707 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 GNEQ9Y223 722 aaKnown RBP26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 MYH7BA7E2Y1 1941 aa26.16■■□□□ 1.78
CCDC28B-203ENST00000461819 STAM2O75886 525 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 CLK2P49760 499 aaKnown RBP26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 MNX1P50219 401 aaPredicted RBP26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 GJA9P57773 515 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 TMEM63BQ5T3F8 832 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 JAKMIP3Q5VZ66 844 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 XRRA1Q6P2D8 792 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 UBE2Q1Q7Z7E8 422 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 ANO3Q9BYT9 981 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 UPF3AQ9H1J1 476 aaKnown RBP26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 MRVI1Q9Y6F6 885 aa26.15■■□□□ 1.78
CCDC28B-203ENST00000461819 NKRFO15226 690 aaKnown RBP eCLIP26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 DYNC1LI2O43237 492 aaPredicted RBP26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 JAK2O60674 1132 aa26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 PTGS1P23219 599 aa26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 MCM2P49736 904 aa26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 MRPS9P82933 396 aaKnown RBP26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 GNPTABQ3T906 1256 aa26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 MCTP2Q6DN12 878 aa26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 FAM177A1Q8N128 213 aaPredicted RBP26.14■■□□□ 1.78
CCDC28B-203ENST00000461819 ARIH2O95376 493 aa26.13■■□□□ 1.77
CCDC28B-203ENST00000461819 OR6J1Q8NGC5 347 aa26.13■■□□□ 1.77
CCDC28B-203ENST00000461819 ALG1Q9BT22 464 aa26.13■■□□□ 1.77
CCDC28B-203ENST00000461819 RTEL1Q9NZ71 1219 aa26.13■■□□□ 1.77
CCDC28B-203ENST00000461819 Q9Y3F1 56 aa26.13■■□□□ 1.77
CCDC28B-203ENST00000461819 MYADML2A6NDP7 307 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 RGS20O76081 388 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 CD2BP2O95400 341 aaKnown RBP26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 LY6KQ17RY6 165 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 GNASQ5JWF2 1037 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 KCNV1Q6PIU1 500 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 LLPHQ9BRT6 129 aaKnown RBP26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 PCDHA4Q9UN74 947 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 DOCK5Q9H7D0 1870 aa26.12■■□□□ 1.77
CCDC28B-203ENST00000461819 FDPSP14324 419 aaKnown RBP26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 CST5P28325 142 aaPredicted RBP26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 IRX5P78411 483 aaPredicted RBP26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 FSCN1Q16658 493 aaKnown RBP26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 CCDC62Q6P9F0 684 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 KLHDC9Q8NEP7 349 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 RASGRP4Q8TDF6 673 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 COPS5Q92905 334 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 INPP4AQ96PE3 977 aaPredicted RBP26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 HTATIP2Q9BUP3 242 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 SENP6Q9GZR1 1112 aaPredicted RBP26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 KCNJ14Q9UNX9 436 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 ALPK3Q96L96 1907 aa26.11■■□□□ 1.77
CCDC28B-203ENST00000461819 ADAMTS3O15072 1205 aa26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 COL6A1P12109 1028 aa26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 BEX3Q00994 111 aa26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 GALNT17Q6IS24 598 aa26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 NLRX1Q86UT6 975 aa26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 PCSK9Q8NBP7 692 aaKnown RBP26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 TSEN34Q9BSV6 310 aaKnown RBP26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 DDX41Q9UJV9 622 aaKnown RBP26.1■■□□□ 1.77
CCDC28B-203ENST00000461819 GH1P01241 217 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 SREBF1P36956 1147 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 KCNA10Q16322 511 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 BLIDQ8IZY5 108 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 FERMT2Q96AC1 680 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 TMX3Q96JJ7 454 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 PHF20Q9BVI0 1012 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 PHF24Q9UPV7 400 aa26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 TNRC18O15417 2968 aaPredicted RBP26.09■■□□□ 1.77
CCDC28B-203ENST00000461819 MOXD2PA6NHM9 499 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 FIBPO43427 364 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 ZEB2O60315 1214 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 CPT1AP50416 773 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 ACLYP53396 1101 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 FOSBP53539 338 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 NKX3-2P78367 333 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 HMGN5P82970 282 aaKnown RBP26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 ARHGAP4P98171 946 aa26.08■■□□□ 1.77
CCDC28B-203ENST00000461819 TRIM29Q14134 588 aa26.08■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms