RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 ZEB2O60315 1214 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 DEXIO95424 95 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 PGK1P00558 417 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 C6orf222P0C671 652 aaPredicted RBP13.61□□□□□ -0.23
VPS52-213ENST00000461743 GNA11P29992 359 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 CPT1AP50416 773 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 SSRP1Q08945 709 aaKnown RBP13.61□□□□□ -0.23
VPS52-213ENST00000461743 SNX17Q15036 470 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 RABEP1Q15276 862 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 PKN1Q16512 942 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 GNPTABQ3T906 1256 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 GJC2Q5T442 439 aaPredicted RBP13.61□□□□□ -0.23
VPS52-213ENST00000461743 PCNX4Q63HM2 1172 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 CCSAPQ6IQ19 270 aaPredicted RBP13.61□□□□□ -0.23
VPS52-213ENST00000461743 TYW1BQ6NUM6 668 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 USP17L6PQ6QN14 398 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 BICD2Q8TD16 824 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 PHKBQ93100 1093 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 GTF3C6Q969F1 213 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 SLC26A6Q9BXS9 759 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 SEZ6LQ9BYH1 1024 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 ZMYND12Q9H0C1 365 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 PDGFCQ9NRA1 345 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 TPCN1Q9ULQ1 816 aa13.61□□□□□ -0.23
VPS52-213ENST00000461743 MYH9P35579 1960 aaKnown RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 CABYRO75952 493 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 TGFB3P10600 412 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 CLK2P49760 499 aaKnown RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 SCRN1Q12765 414 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 FSCN1Q16658 493 aaKnown RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 BRDTQ58F21 947 aaPredicted RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 NOL8Q76FK4 1167 aaKnown RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 IL31RAQ8NI17 732 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 EMID1Q96A84 441 aaPredicted RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 INPP4AQ96PE3 977 aaPredicted RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 KIF2CQ99661 725 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 TANC1Q9C0D5 1861 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 C6orf50Q9HD87 102 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 DDX49Q9Y6V7 483 aaKnown RBP13.6□□□□□ -0.23
VPS52-213ENST00000461743 ELP1O95163 1332 aa13.6□□□□□ -0.23
VPS52-213ENST00000461743 A0A1W2PQ45 241 aaPredicted RBP13.59□□□□□ -0.23
VPS52-213ENST00000461743 A0A1W2PQY0 241 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 SMCO2A6NFE2 343 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 CTAGE5O15320 804 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 TXNP10599 105 aaKnown RBP13.59□□□□□ -0.23
VPS52-213ENST00000461743 MYCLP12524 364 aaPredicted RBP13.59□□□□□ -0.23
VPS52-213ENST00000461743 ICAM3P32942 547 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 ACLYP53396 1101 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 STK3Q13188 491 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 CCDC62Q6P9F0 684 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 REXO1Q8N1G1 1221 aaKnown RBP13.59□□□□□ -0.23
VPS52-213ENST00000461743 OR6J1Q8NGC5 347 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 CDHR1Q96JP9 859 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 TBC1D32Q96NH3 1257 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 POLR3EQ9NVU0 708 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 NR2E3Q9Y5X4 410 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 MRVI1Q9Y6F6 885 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 MROH7Q68CQ1 1323 aa13.59□□□□□ -0.23
VPS52-213ENST00000461743 MYADML2A6NDP7 307 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 ST18O60284 1047 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 EVI5O60447 810 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 KPNA6O60684 536 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 GH1P01241 217 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 KCNA10Q16322 511 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 UBE2SQ16763 222 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 ME3Q16798 604 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 GNASQ5JWF2 1037 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 PRPF38BQ5VTL8 546 aaKnown RBP13.58□□□□□ -0.24
VPS52-213ENST00000461743 GALNT17Q6IS24 598 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 SEPT14Q6ZU15 432 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 NLRX1Q86UT6 975 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 WASF1Q92558 559 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 GPRASP2Q96D09 838 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 GLT1D1Q96MS3 346 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 ANO3Q9BYT9 981 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 SENP6Q9GZR1 1112 aaPredicted RBP13.58□□□□□ -0.24
VPS52-213ENST00000461743 SH2B1Q9NRF2 756 aaPredicted RBP13.58□□□□□ -0.24
VPS52-213ENST00000461743 DDX41Q9UJV9 622 aaKnown RBP13.58□□□□□ -0.24
VPS52-213ENST00000461743 PCDHA6Q9UN73 950 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 LIMCH1Q9UPQ0 1083 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 PCDHA8Q9Y5H6 950 aa13.58□□□□□ -0.24
VPS52-213ENST00000461743 A6NJR5 290 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 DYNC1LI2O43237 492 aaPredicted RBP13.57□□□□□ -0.24
VPS52-213ENST00000461743 FIBPO43427 364 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 RGS20O76081 388 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 ARIH2O95376 493 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 MYCNP04198 464 aaPredicted RBP13.57□□□□□ -0.24
VPS52-213ENST00000461743 ASGR1P07306 291 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 XBP1P17861 261 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 SREBF1P36956 1147 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 MRPS9P82933 396 aaKnown RBP13.57□□□□□ -0.24
VPS52-213ENST00000461743 SLC39A5Q6ZMH5 540 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 DAGLBQ8NCG7 672 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 DPF3Q92784 378 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 ZSCAN31Q96LW9 406 aaPredicted RBP13.57□□□□□ -0.24
VPS52-213ENST00000461743 STARD7Q9NQZ5 370 aa13.57□□□□□ -0.24
VPS52-213ENST00000461743 A0A0U1RQG5 324 aaPredicted RBP13.56□□□□□ -0.24
VPS52-213ENST00000461743 MAFGO15525 162 aa13.56□□□□□ -0.24
VPS52-213ENST00000461743 UBA1P22314 1058 aaKnown RBP13.56□□□□□ -0.24
VPS52-213ENST00000461743 ARHGAP1Q07960 439 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms