RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 PCDHA4Q9UN74 947 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 DDX60Q8IY21 1712 aaKnown RBP9.3□□□□□ -0.92
USP54-208ENST00000461520 THSD7BQ9C0I4 1608 aa9.3□□□□□ -0.92
USP54-208ENST00000461520 LRRC37AA6NMS7 1700 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 NTF4P34130 210 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 RPS8P62241 208 aaKnown RBP9.29□□□□□ -0.92
USP54-208ENST00000461520 MAP2K1Q02750 393 aaPredicted RBP9.29□□□□□ -0.92
USP54-208ENST00000461520 BNIP3Q12983 259 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 LRRC14Q15048 493 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 EYA3Q99504 573 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 MYD88Q99836 296 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 PICK1Q9NRD5 415 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 TTF2Q9UNY4 1162 aaKnown RBP9.29□□□□□ -0.92
USP54-208ENST00000461520 DUOX1Q9NRD9 1551 aa9.29□□□□□ -0.92
USP54-208ENST00000461520 ANKRD33BA6NCL7 494 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 YDJCA8MPS7 323 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 PDE8AO60658 829 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 RAD17O75943 681 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 PCCAP05165 728 aaPredicted RBP9.28□□□□□ -0.92
USP54-208ENST00000461520 GMPSP49915 693 aaPredicted RBP9.28□□□□□ -0.92
USP54-208ENST00000461520 PTPN11Q06124 597 aaPredicted RBP9.28□□□□□ -0.92
USP54-208ENST00000461520 CCDC184Q52MB2 194 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 SPRED2Q7Z698 418 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 BCL2L13Q9BXK5 485 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 CWC25Q9NXE8 425 aaPredicted RBP9.28□□□□□ -0.92
USP54-208ENST00000461520 CYP8B1Q9UNU6 501 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 SLC5A6Q9Y289 635 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 IL16Q14005 1332 aa9.28□□□□□ -0.92
USP54-208ENST00000461520 TRAF5O00463 557 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 GNA15P30679 374 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 GPSM2P81274 684 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 RING1Q06587 406 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 INPP5AQ14642 412 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 CCDC152Q4G0S7 254 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 CYP4F22Q6NT55 531 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 KSR2Q6VAB6 950 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 TSPYL6Q8N831 410 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 NETO1Q8TDF5 533 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 DPF2Q92785 391 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 CAPNS2Q96L46 248 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 KRTAP4-12Q9BQ66 201 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 STK31Q9BXU1 1019 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 PODXL2Q9NZ53 605 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 POLLQ9UGP5 575 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 PGAP2Q9UHJ9 254 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 MAP3K2Q9Y2U5 619 aa9.27□□□□□ -0.93
USP54-208ENST00000461520 PI4KAP2A4QPH2 592 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 CCDC85CA6NKD9 419 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 H7C1D1 291 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 PRPF40AO75400 957 aaKnown RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 EIF4BP23588 611 aaKnown RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 RPS12P25398 132 aaKnown RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 ECE1P42892 770 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 NEXNQ0ZGT2 675 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 TWISTNBQ3B726 338 aaPredicted RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 CST9Q5W186 159 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 CBLL1Q75N03 491 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 WFDC3Q8IUB2 231 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 PI4KAP1Q8N8J0 262 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 TBC1D16Q8TBP0 767 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 TSR2Q969E8 191 aaKnown RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 FRMD6Q96NE9 622 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 DUSP9Q99956 384 aaKnown RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 DBNDD1Q9H9R9 158 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 MRS2Q9HD23 443 aa9.26□□□□□ -0.93
USP54-208ENST00000461520 CNOT7Q9UIV1 285 aaKnown RBP9.26□□□□□ -0.93
USP54-208ENST00000461520 TAF1P21675 1872 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 PSMD14O00487 310 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 ANP32CO43423 234 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 ECE2O60344 883 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 IGKV5-2P06315 115 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 OXCT1P55809 520 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 ZBTB37Q5TC79 503 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 SND1Q7KZF4 910 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP54-208ENST00000461520 SV2BQ7L1I2 683 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 CDC37L1Q7L3B6 337 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 AGBL5Q8NDL9 886 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 ELMO3Q96BJ8 720 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 HEXIM2Q96MH2 286 aaKnown RBP9.25□□□□□ -0.93
USP54-208ENST00000461520 GPR101Q96P66 508 aaPredicted RBP9.25□□□□□ -0.93
USP54-208ENST00000461520 RNF114Q9Y508 228 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 COL4A1P02462 1669 aa9.25□□□□□ -0.93
USP54-208ENST00000461520 CASP8AP2Q9UKL3 1982 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 FANCGO15287 622 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 CD96P40200 585 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 CTSWP56202 376 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 LRFN4Q6PJG9 635 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.24□□□□□ -0.93
USP54-208ENST00000461520 ANKRD18AQ8IVF6 992 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 WDR63Q8IWG1 891 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 CDC5LQ99459 802 aaKnown RBP9.24□□□□□ -0.93
USP54-208ENST00000461520 PLAGL2Q9UPG8 496 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 AK5Q9Y6K8 562 aa9.24□□□□□ -0.93
USP54-208ENST00000461520 UFL1O94874 794 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 CELF2O95319 508 aaKnown RBP9.23□□□□□ -0.93
USP54-208ENST00000461520 VIL1P09327 827 aaKnown RBP9.23□□□□□ -0.93
USP54-208ENST00000461520 PDIA4P13667 645 aaKnown RBP9.23□□□□□ -0.93
USP54-208ENST00000461520 ITIH2P19823 946 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 TTBK2Q6IQ55 1244 aa9.23□□□□□ -0.93
USP54-208ENST00000461520 FAM214BQ7L5A3 538 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms