RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	SPDYE6	P0CI01	402 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	CASQ1	P31415	396 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	GTF2I	P78347	998 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	AKAP17A	Q02040	695 aa	Known RBP	9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	RRAGB	Q5VZM2	374 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	HGSNAT	Q68CP4	663 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	RETREG2	Q8NC44	543 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	JAG2	Q9Y219	1238 aa		9.83	□□□□□ -0.84
SYNE1-215	ENST00000460912	PVALEF	A0A1B0GWK0	134 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	CCDC151	A5D8V7	595 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	MYMK	A6NI61	221 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	NOL4	O94818	638 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	TPM1	P09493	284 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	CRK	P46108	304 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	KLK7	P49862	253 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	USP17L2	Q6R6M4	530 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	MAPKAPK5	Q8IW41	473 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	P2RX5	Q93086	422 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	LENG9	Q96B70	501 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	TAOK3	Q9H2K8	898 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	TAB2	Q9NYJ8	693 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	SHTN1	A0MZ66	631 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	EIF3CL	B5ME19	914 aa	Known RBP	9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	TULP1	O00294	542 aa	Predicted RBP	9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	OPLAH	O14841	1288 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	PJA2	O43164	708 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	BAG3	O95817	575 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	FCER1A	P12319	257 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZNF543	Q08ER8	600 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	NEK8	Q86SG6	692 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	EIF3C	Q99613	913 aa	Known RBP	9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZC3H12C	Q9C0D7	883 aa	Known RBP	9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	AGPAT5	Q9NUQ2	364 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	TMEM260	Q9NX78	707 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	TRIM10	Q9UDY6	481 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	DOCK5	Q9H7D0	1870 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912	ATP8B3	O60423	1300 aa		9.82	□□□□□ -0.84
SYNE1-215	ENST00000460912		H3BQF6	201 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	RIMBP2	O15034	1052 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	SEC31A	O94979	1220 aa	Known RBP	9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	GOLGA8H	P0CJ92	632 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	CCT6A	P40227	531 aa	Known RBP	9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	STAT6	P42226	847 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	GNG11	P61952	73 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZFPM1	Q8IX07	1006 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	SLC35F6	Q8N357	371 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	PIGS	Q96S52	555 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	ZNF236	Q9UL36	1845 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	MYH10	P35580	1976 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	TBC1D12	O60347	775 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	EGFR	P00533	1210 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	TSPY3	P0CV98	308 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	TSPY8	P0CW00	308 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	ITIH3	Q06033	890 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	KCNMA1	Q12791	1236 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	BMS1	Q14692	1282 aa	Known RBP	9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	ASPRV1	Q53RT3	343 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	EPM2AIP1	Q7L775	607 aa	Predicted RBP	9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	KCTD10	Q9H3F6	313 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	STK17A	Q9UEE5	414 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	PLAGL2	Q9UPG8	496 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	HOXD13	P35453	343 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	RRP1B	Q14684	758 aa	Known RBP	9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	CABP7	Q86V35	215 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	TBCK	Q8TEA7	893 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	LACRT	Q9GZZ8	138 aa		9.81	□□□□□ -0.84
SYNE1-215	ENST00000460912	SMCO2	A6NFE2	343 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	AKR1B1	P15121	316 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	ATP2B1	P20020	1258 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	DNM2	P50570	870 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	BRD3	Q15059	726 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	NONO	Q15233	471 aa	Known RBP eCLIP	9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	UNC13D	Q70J99	1090 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	RAD54L	Q92698	747 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	VPS16	Q9H269	839 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	SWAP70	Q9UH65	585 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	PHF20L1	A8MW92	1017 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	C6orf229	H3BNL8	230 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	LDHC	P07864	332 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	PLCG2	P16885	1265 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	AARS	P49588	968 aa	Known RBP eCLIP	9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	WHAMMP3	Q1A5X7	153 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	GUF1	Q8N442	669 aa	Known RBP	9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	GLIS3	Q8NEA6	775 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	ETNPPL	Q8TBG4	499 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	FGFBP2	Q9BYJ0	223 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	PSD3	Q9NYI0	1048 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	SAP30BP	Q9UHR5	308 aa	Known RBP	9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	MYH11	P35749	1972 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	URI1	O94763	535 aa	Predicted RBP	9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	PPP1R2	P41236	205 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	TUBB4B	P68371	445 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	JAG1	P78504	1218 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	MOXD1	Q6UVY6	613 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	CCDC170	Q8IYT3	715 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	ARHGAP20	Q9P2F6	1191 aa		9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	EPN1	Q9Y6I3	576 aa	Predicted RBP	9.8	□□□□□ -0.84
SYNE1-215	ENST00000460912	PPIP5K2	O43314	1243 aa		9.79	□□□□□ -0.84
SYNE1-215	ENST00000460912	ENTPD3	O75355	529 aa		9.79	□□□□□ -0.84

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