RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 TRIM58Q8NG06 486 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 NKX2-3Q8TAU0 364 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 BICD1Q96G01 975 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 CCDC17Q96LX7 622 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 NDST4Q9H3R1 872 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 NHEJ1Q9H9Q4 299 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-204ENST00000460696 USP17L10C9JJH3 530 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 SRGAP2O75044 1071 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 VEGFAP15692 232 aaPredicted RBP12.85□□□□□ -0.35
NPHP4-204ENST00000460696 MRPS25P82663 173 aaKnown RBP12.85□□□□□ -0.35
NPHP4-204ENST00000460696 RTKN2Q8IZC4 609 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 DDX12PQ92771 950 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 AMNQ9BXJ7 453 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 FRMD4BQ9Y2L6 1034 aa12.85□□□□□ -0.35
NPHP4-204ENST00000460696 ARHGEF35A5YM69 484 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 ZEB2O60315 1214 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 MAN2A1Q16706 1144 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 TTBK2Q6IQ55 1244 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 MIGA2Q7L4E1 593 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.84□□□□□ -0.35
NPHP4-204ENST00000460696 STK17AQ9UEE5 414 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 CEP104O60308 925 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 CCDC172P0C7W6 258 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 XRCC5P13010 732 aaKnown RBP12.84□□□□□ -0.35
NPHP4-204ENST00000460696 DMTNQ08495 405 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 ZCCHC17Q9NP64 241 aaKnown RBP12.84□□□□□ -0.35
NPHP4-204ENST00000460696 LRP6O75581 1613 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 PNMA6FA0A0J9YX94 578 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 CALUO43852 315 aaPredicted RBP12.84□□□□□ -0.35
NPHP4-204ENST00000460696 EIF4A3P38919 411 aaKnown RBP12.84□□□□□ -0.35
NPHP4-204ENST00000460696 KIAA0753Q2KHM9 967 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 CSRNP1Q96S65 589 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 COA1Q9GZY4 146 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 KANSL2Q9H9L4 492 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 SWAP70Q9UH65 585 aa12.84□□□□□ -0.35
NPHP4-204ENST00000460696 EXOC3O60645 756 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 GAS7O60861 476 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 NR2F2P24468 414 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 HOXA13P31271 388 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-204ENST00000460696 CYP2J2P51589 502 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 GYS2P54840 703 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 ARHGAP44Q17R89 818 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 CFAP58Q5T655 872 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 ST7Q9NRC1 585 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 CCDC151A5D8V7 595 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 PPP1R3GB7ZBB8 358 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 STK4Q13043 487 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 MED1Q15648 1581 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-204ENST00000460696 FLT1P17948 1338 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 MYCLP12524 364 aaPredicted RBP12.83□□□□□ -0.36
NPHP4-204ENST00000460696 RASGRP2Q7LDG7 609 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 DHX37Q8IY37 1157 aaKnown RBP12.83□□□□□ -0.36
NPHP4-204ENST00000460696 TBC1D16Q8TBP0 767 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 LMBR1Q8WVP7 490 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 TRIM9Q9C026 710 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 KIF1AQ12756 1690 aa12.83□□□□□ -0.36
NPHP4-204ENST00000460696 A0A087X0B3 334 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 E9PMD0 336 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 OPA1O60313 960 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 TADA3O75528 432 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 DDNO94850 711 aaPredicted RBP12.82□□□□□ -0.36
NPHP4-204ENST00000460696 BMP6P22004 513 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 KCNJ6P48051 423 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 VWA3BQ502W6 1294 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 ANKRD40Q6AI12 368 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 REXO1L1PQ8IX06 675 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 RETREG2Q8NC44 543 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 TRIM31Q9BZY9 425 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 MYO1AQ9UBC5 1043 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 HDAC6Q9UBN7 1215 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 CNTNAP4Q9C0A0 1308 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 GOLGA6BA6NDN3 693 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 GYPCP04921 128 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 PLA2G4BP0C869 781 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 TNNC1P63316 161 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 CDC37Q16543 378 aaPredicted RBP12.82□□□□□ -0.36
NPHP4-204ENST00000460696 CFAP221Q4G0U5 840 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 NSMFQ6X4W1 530 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 DAGLAQ9Y4D2 1042 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 FAM205AQ6ZU69 1335 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 STXBP3O00186 592 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 CLIC2O15247 247 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 MOCS3O95396 460 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 RNF187Q5TA31 235 aaPredicted RBP12.82□□□□□ -0.36
NPHP4-204ENST00000460696 SLFN12Q8IYM2 578 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 ADSSL1Q8N142 457 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 FAM76AQ8TAV0 307 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 EMILIN3Q9NT22 766 aa12.82□□□□□ -0.36
NPHP4-204ENST00000460696 CCDC169A6NNP5 214 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 ABCB4P21439 1286 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 EHHADHQ08426 723 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 SEPT2Q15019 361 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 KRT26Q7Z3Y9 468 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 CCSER1Q9C0I3 900 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 ABCB6Q9NP58 842 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 PI4KBQ9UBF8 816 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 TRIM10Q9UDY6 481 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 COL4A3BPQ9Y5P4 624 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 TNFAIP3P21580 790 aa12.81□□□□□ -0.36
NPHP4-204ENST00000460696 RPS6KA1Q15418 735 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms