RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 ADAMTS7Q9UKP4 1686 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 HMGB1P1B2RPK0 211 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 EZRP15311 586 aaKnown RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 PRLRP16471 622 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 MAGOHP61326 146 aaKnown RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 ZNF622Q969S3 477 aaKnown RBP eCLIP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 MAGOHBQ96A72 148 aaKnown RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 PAGR1Q9BTK6 254 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 CPVLQ9H3G5 476 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 SLC12A6Q9UHW9 1150 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 RTL9Q8NET4 1388 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 MYH2Q9UKX2 1941 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 SMIM23A6NLE4 172 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 TRAPPC3O43617 180 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 UQCRFS1P1P0C7P4 283 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 ECHS1P30084 290 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 LONP1P36776 959 aaKnown RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 MYO1EQ12965 1108 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 PUM3Q15397 648 aaKnown RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 CPLX4Q7Z7G2 160 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 PNMA8AQ86V59 439 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 TEX11Q8IYF3 940 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 NLRP3Q96P20 1036 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 ERGIC2Q96RQ1 377 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 CARD10Q9BWT7 1032 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 DDX47Q9H0S4 455 aaKnown RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 RNF41Q9H4P4 317 aaPredicted RBP12.91□□□□□ -0.34
CPSF3-202ENST00000460593 FBXL5Q9UKA1 691 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 FER1L4A9Z1Z3 1794 aa12.91□□□□□ -0.34
CPSF3-202ENST00000460593 KCNK3O14649 394 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 CLTAP09496 248 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 SATB1Q01826 763 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 TXNRD1Q16881 649 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 VWA3BQ502W6 1294 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 CACNA2D3Q8IZS8 1091 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 RETREG2Q8NC44 543 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 BAP1Q92560 729 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 TRHP20396 242 aaPredicted RBP12.9□□□□□ -0.34
CPSF3-202ENST00000460593 TNFRSF8P28908 595 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 KIF6Q6ZMV9 814 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 NLRP10Q86W26 655 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 UIMC1Q96RL1 719 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 KBTBD4Q9NVX7 518 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 FBXO3Q9UK99 471 aa12.9□□□□□ -0.34
CPSF3-202ENST00000460593 CHD4Q14839 1912 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 EME2A4GXA9 379 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 TLR2O60603 784 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 CYP2D6P10635 497 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 FAM133BQ5BKY9 247 aaKnown RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 BLIDQ8IZY5 108 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 STAG2Q8N3U4 1231 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 TBC1D5Q92609 795 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 TRIM9Q9C026 710 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 MTFR1LQ9H019 292 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 DPH5Q9H2P9 285 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 GLI3P10071 1580 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 A6NNZ2 444 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 H0YGN5 161 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 HGSO14964 777 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 ITGA4P13612 1032 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 KCNB1Q14721 858 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 TUBB8Q3ZCM7 444 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 GLE1Q53GS7 698 aaKnown RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 HGSNATQ68CP4 663 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 MSL1Q68DK7 614 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 PPP4R3AQ6IN85 833 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 TLDC1Q6P9B6 456 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 TBC1D1Q86TI0 1168 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 DHTKD1Q96HY7 919 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 CELF4Q9BZC1 486 aaKnown RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 NOD2Q9HC29 1040 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 NFS1Q9Y697 457 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 CEP104O60308 925 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 HSPA9P38646 679 aaKnown RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 ELF3P78545 371 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 ZSCAN29Q8IWY8 852 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 CD302Q8IX05 232 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 UHMK1Q8TAS1 419 aaKnown RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 ZNF512BQ96KM6 892 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 INPP4AQ96PE3 977 aaPredicted RBP12.89□□□□□ -0.35
CPSF3-202ENST00000460593 ADAMTS1Q9UHI8 967 aa12.89□□□□□ -0.35
CPSF3-202ENST00000460593 DISP2A7MBM2 1401 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 CCDC194A0A1B0GVG4 234 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 F8W031 263 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-202ENST00000460593 DAPK3O43293 454 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 PLCB4Q15147 1175 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 CABP7Q86V35 215 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 NSMCE1Q8WV22 266 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 TRIM6Q9C030 488 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-202ENST00000460593 TAF1DQ9H5J8 278 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-202ENST00000460593 A0A087X0T9 212 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 A0A1W2PQJ5 194 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 USP17L12C9JPN9 530 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 USP17L21D6R901 530 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 BUB1BO60566 1050 aaPredicted RBP12.88□□□□□ -0.35
CPSF3-202ENST00000460593 ATP6V1G2O95670 118 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 FAM228BP0C875 321 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 FGFR2P21802 821 aa12.88□□□□□ -0.35
CPSF3-202ENST00000460593 TECP42680 631 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms