RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 RABGGTAQ92696 567 aa17.08■□□□□ 0.33
LMNB1-203ENST00000460265 CTDP1Q9Y5B0 961 aaPredicted RBP17.08■□□□□ 0.33
LMNB1-203ENST00000460265 COL4A1P02462 1669 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 ERLIN1O75477 346 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 TFRCP02786 760 aaKnown RBP17.08■□□□□ 0.32
LMNB1-203ENST00000460265 LIG3P49916 1009 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 SETQ01105 290 aaPredicted RBP17.08■□□□□ 0.32
LMNB1-203ENST00000460265 SLC27A3Q5K4L6 730 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 SUGP1Q8IWZ8 645 aaKnown RBP17.08■□□□□ 0.32
LMNB1-203ENST00000460265 CSRNP1Q96S65 589 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 PNMA6FA0A0J9YX94 578 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 ERLIN2O94905 339 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 USP8P40818 1118 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 MIGA2Q7L4E1 593 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 ADSSL1Q8N142 457 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 JMJD4Q9H9V9 463 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 ABHD10Q9NUJ1 306 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 TRIM10Q9UDY6 481 aa17.08■□□□□ 0.32
LMNB1-203ENST00000460265 A0A087WUV0 522 aaPredicted RBP17.07■□□□□ 0.32
LMNB1-203ENST00000460265 CCDC151A5D8V7 595 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 SRGNP10124 158 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 STAT3P40763 770 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 CHMP4BP1P59074 171 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 MASTLQ96GX5 879 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 CEP89Q96ST8 783 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 PAPPAQ13219 1627 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 PDS5AQ29RF7 1337 aaKnown RBP17.07■□□□□ 0.32
LMNB1-203ENST00000460265 ABCA3Q99758 1704 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 E9PMD0 336 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 LAD1O00515 517 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 GH2P01242 217 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 PLS1Q14651 629 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 ABCB5Q2M3G0 1257 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 MB21D1Q8N884 522 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 DDX12PQ92771 950 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 PANX2Q96RD6 677 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 AGPAT5Q9NUQ2 364 aa17.07■□□□□ 0.32
LMNB1-203ENST00000460265 CYLC1P35663 651 aaPredicted RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 QRICH1Q2TAL8 776 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 NAALADL2Q58DX5 795 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 TRIM65Q6PJ69 517 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 RRAGAQ7L523 313 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 AK8Q96MA6 479 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 DNM2P50570 870 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 ZNF543Q08ER8 600 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 PABPC4Q13310 644 aaKnown RBP eCLIP17.06■□□□□ 0.322e-40■■■■■ 32.5
LMNB1-203ENST00000460265 SWT1Q5T5J6 900 aaKnown RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 ELOA2Q8IYF1 753 aaPredicted RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 SMCR8Q8TEV9 937 aaPredicted RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 KIFC2Q96AC6 838 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 GDAP1L1Q96MZ0 367 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 NUDT12Q9BQG2 462 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CCSER1Q9C0I3 900 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CTAGE15A4D2H0 777 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CTAGE8P0CG41 777 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CCNE1P24864 410 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 BRD3Q15059 726 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 GPATCH4Q5T3I0 446 aaKnown RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 MAEAQ7L5Y9 396 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CTAGE6Q86UF2 777 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CTAGE4Q8IX94 777 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 CCDC43Q96MW1 224 aaKnown RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 NAA15Q9BXJ9 866 aaKnown RBP17.06■□□□□ 0.32
LMNB1-203ENST00000460265 PI4KBQ9UBF8 816 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 TCEAL9Q9UHQ7 104 aa17.06■□□□□ 0.32
LMNB1-203ENST00000460265 RNF225M0QZC1 329 aaPredicted RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 KIF1CO43896 1103 aaKnown RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 ECE2O60344 883 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 CDC37Q16543 378 aaPredicted RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 LRRC31Q6UY01 552 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 GPBP1Q86WP2 473 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 LARGE2Q8N3Y3 721 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 GIMAP7Q8NHV1 300 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 SPATA20Q8TB22 786 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 DDTLA6NHG4 134 aaPredicted RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 ZBTB5O15062 677 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 FGFR1OPO95684 399 aaKnown RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 KIF5AQ12840 1032 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 CDKAL1Q5VV42 579 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 SLC30A10Q6XR72 485 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 NAPGQ99747 312 aaPredicted RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 MYMKA6NI61 221 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 DDX39AO00148 427 aaKnown RBP17.05■□□□□ 0.32
LMNB1-203ENST00000460265 ABL1P00519 1130 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 SATB1Q01826 763 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 CRY2Q49AN0 593 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 C4orf32Q8N8J7 132 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 ZBTB21Q9ULJ3 1066 aa17.05■□□□□ 0.32
LMNB1-203ENST00000460265 F5H6K3 240 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 KLRC3Q07444 240 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 CPXCR1Q8N123 301 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 PANK4Q9NVE7 773 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 SWAP70Q9UH65 585 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 NPHP3-ACAD11A0A0J9YXS1 232 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 KRT86O43790 486 aa17.04■□□□□ 0.32
LMNB1-203ENST00000460265 TBX2Q13207 712 aaPredicted RBP17.04■□□□□ 0.32
LMNB1-203ENST00000460265 TMED8Q6PL24 325 aaPredicted RBP17.04■□□□□ 0.32
LMNB1-203ENST00000460265 DHTKD1Q96HY7 919 aaPredicted RBP17.04■□□□□ 0.32
LMNB1-203ENST00000460265 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.04■□□□□ 0.32
LMNB1-203ENST00000460265 SAMM50Q9Y512 469 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms