RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 PPP1R12CQ9BZL4 782 aa24.51■■□□□ 1.51
HMGB3-205ENST00000455596 DDX41Q9UJV9 622 aaKnown RBP24.51■■□□□ 1.51
HMGB3-205ENST00000455596 DOCK5Q9H7D0 1870 aa24.51■■□□□ 1.51
HMGB3-205ENST00000455596 HMGB1P09429 215 aaKnown RBP24.5■■□□□ 1.51
HMGB3-205ENST00000455596 CCND2P30279 289 aa24.5■■□□□ 1.51
HMGB3-205ENST00000455596 ARHGAP1Q07960 439 aa24.5■■□□□ 1.51
HMGB3-205ENST00000455596 APOA5Q6Q788 366 aa24.5■■□□□ 1.51
HMGB3-205ENST00000455596 TMEM199Q8N511 208 aa24.5■■□□□ 1.51
HMGB3-205ENST00000455596 CUL5Q93034 780 aa24.5■■□□□ 1.51
HMGB3-205ENST00000455596 MMP3P08254 477 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 EPHB4P54760 987 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 PPIGQ13427 754 aaKnown RBP eCLIP24.49■■□□□ 1.51
HMGB3-205ENST00000455596 KCNV1Q6PIU1 500 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 TMTC3Q6ZXV5 915 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 IL31RAQ8NI17 732 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 SMARCC2Q8TAQ2 1214 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 AFG1LQ8WV93 481 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 TRPV6Q9H1D0 765 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 ALDH8A1Q9H2A2 487 aaPredicted RBP24.49■■□□□ 1.51
HMGB3-205ENST00000455596 HIPK3Q9H422 1215 aa24.49■■□□□ 1.51
HMGB3-205ENST00000455596 REC8O95072 547 aa24.48■■□□□ 1.51
HMGB3-205ENST00000455596 HSPA4P34932 840 aa24.48■■□□□ 1.51
HMGB3-205ENST00000455596 FRMPD4Q14CM0 1322 aa24.48■■□□□ 1.51
HMGB3-205ENST00000455596 CCDC82Q8N4S0 544 aa24.48■■□□□ 1.51
HMGB3-205ENST00000455596 KCNB2Q92953 911 aa24.48■■□□□ 1.51
HMGB3-205ENST00000455596 EMID1Q96A84 441 aaPredicted RBP24.48■■□□□ 1.51
HMGB3-205ENST00000455596 RNPC3Q96LT9 517 aaKnown RBP24.48■■□□□ 1.51
HMGB3-205ENST00000455596 RBM28Q9NW13 759 aaKnown RBP24.48■■□□□ 1.51
HMGB3-205ENST00000455596 ZBTB43O43298 467 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 RGS20O76081 388 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 SUPT20HL2P0C7V6 817 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 CASTP20810 708 aaKnown RBP24.47■■□□□ 1.51
HMGB3-205ENST00000455596 CYP2C18P33260 490 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 NBPF20Q3BBV1 942 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 FAM47CQ5HY64 1035 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 NFRKBQ6P4R8 1299 aa24.47■■□□□ 1.51
HMGB3-205ENST00000455596 DHX37Q8IY37 1157 aaKnown RBP24.47■■□□□ 1.51
HMGB3-205ENST00000455596 PIK3CDO00329 1044 aa24.46■■□□□ 1.51
HMGB3-205ENST00000455596 CSF2RAP15509 400 aa24.46■■□□□ 1.51
HMGB3-205ENST00000455596 LAMC2Q13753 1193 aa24.46■■□□□ 1.51
HMGB3-205ENST00000455596 DEFB123Q8N688 67 aa24.46■■□□□ 1.51
HMGB3-205ENST00000455596 PPP4R2Q9NY27 417 aa24.46■■□□□ 1.51
HMGB3-205ENST00000455596 BRPF3Q9ULD4 1205 aa24.46■■□□□ 1.51
HMGB3-205ENST00000455596 TANC1Q9C0D5 1861 aa24.45■■□□□ 1.51
HMGB3-205ENST00000455596 hCG_1642624A0A1W2PR95 340 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 MEIS2O14770 477 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 STAM2O75886 525 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 TGFB3P10600 412 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 FGD1P98174 961 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 PTPN11Q06124 597 aaPredicted RBP24.45■■□□□ 1.5
HMGB3-205ENST00000455596 DGKDQ16760 1214 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 RTN1Q16799 776 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 ERICH6BQ5W0A0 696 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 USP17L6PQ6QN14 398 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 ZFP91Q96JP5 570 aaPredicted RBP24.45■■□□□ 1.5
HMGB3-205ENST00000455596 JAKMIP1Q96N16 626 aaKnown RBP24.45■■□□□ 1.5
HMGB3-205ENST00000455596 NOC4LQ9BVI4 516 aaKnown RBP24.45■■□□□ 1.5
HMGB3-205ENST00000455596 TRMT13Q9NUP7 481 aaKnown RBP24.45■■□□□ 1.5
HMGB3-205ENST00000455596 SNX14Q9Y5W7 946 aa24.45■■□□□ 1.5
HMGB3-205ENST00000455596 TRIP12Q14669 1992 aaPredicted RBP24.45■■□□□ 1.5
HMGB3-205ENST00000455596 SCN5AQ14524 2016 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 CNTNAP5Q8WYK1 1306 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 KLF18A0A0U1RQI7 1052 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 GNPTABQ3T906 1256 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 Q7L0L9 218 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 PPTC7Q8NI37 304 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.44■■□□□ 1.5
HMGB3-205ENST00000455596 PSTPIP2Q9H939 334 aa24.44■■□□□ 1.5
HMGB3-205ENST00000455596 UMODL1Q5DID0 1318 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 GOLGA8AA7E2F4 631 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 GOLGA8BA8MQT2 603 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 CHMP4BP1P59074 171 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 MRPS9P82933 396 aaKnown RBP24.43■■□□□ 1.5
HMGB3-205ENST00000455596 CELF3Q5SZQ8 465 aaKnown RBP24.43■■□□□ 1.5
HMGB3-205ENST00000455596 BLOC1S2Q6QNY1 142 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 PPP1R13LQ8WUF5 828 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 SZT2Q5T011 3432 aa24.43■■□□□ 1.5
HMGB3-205ENST00000455596 GGPS1O95749 300 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 CPA1P15085 419 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 UBA1P22314 1058 aaKnown RBP24.42■■□□□ 1.5
HMGB3-205ENST00000455596 RCAN1P53805 252 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 CCL23P55773 120 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 SMAD3P84022 425 aaKnown RBP24.42■■□□□ 1.5
HMGB3-205ENST00000455596 TMEM240Q5SV17 173 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 MYSM1Q5VVJ2 828 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 FAM109BQ6ICB4 259 aaPredicted RBP24.42■■□□□ 1.5
HMGB3-205ENST00000455596 PSRC1Q6PGN9 363 aaPredicted RBP24.42■■□□□ 1.5
HMGB3-205ENST00000455596 Q6ZUG5 572 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 HEATR3Q7Z4Q2 680 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 KATNAL1Q9BW62 490 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 IL23AQ9NPF7 189 aa24.42■■□□□ 1.5
HMGB3-205ENST00000455596 NAP1L2Q9ULW6 460 aaPredicted RBP24.42■■□□□ 1.5
HMGB3-205ENST00000455596 LAMA3Q16787 3333 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 EPB41L2O43491 1005 aaKnown RBP24.41■■□□□ 1.5
HMGB3-205ENST00000455596 ACRP10323 421 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 CYP2C9P11712 490 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 SP2Q02086 613 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 PCNX4Q63HM2 1172 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 XRRA1Q6P2D8 792 aa24.41■■□□□ 1.5
HMGB3-205ENST00000455596 C16orf59Q7L2K0 433 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms