RNA–Protein interactions for RNA: ENST00000454134.1

NCKIPSD-208, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 998 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-208ENST00000454134 DDX41Q9UJV9 622 aaKnown RBP19.04■□□□□ 0.64
NCKIPSD-208ENST00000454134 MRVI1Q9Y6F6 885 aa19.04■□□□□ 0.64
NCKIPSD-208ENST00000454134 KPNA6O60684 536 aa19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 CYP2C9P11712 490 aa19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 LIFRP42702 1097 aa19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 SMAD3P84022 425 aaKnown RBP19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 PGM5Q15124 567 aa19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 TMEM240Q5SV17 173 aa19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 RNF20Q5VTR2 975 aa19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 FAM109BQ6ICB4 259 aaPredicted RBP19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 SRBD1Q8N5C6 995 aaKnown RBP19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 RRP36Q96EU6 259 aaKnown RBP19.03■□□□□ 0.64
NCKIPSD-208ENST00000454134 SORBS3O60504 671 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 RGS20O76081 388 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 MMP3P08254 477 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 ZNF697Q5TEC3 545 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 ZNF365Q70YC5 407 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 VSIG10LQ86VR7 867 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 RASEFQ8IZ41 740 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 SAMD3Q8N6K7 520 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 TCEANC2Q96MN5 208 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 WNT8AQ9H1J5 351 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 SLC12A7Q9Y666 1083 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 SCN10AQ9Y5Y9 1956 aa19.02■□□□□ 0.64
NCKIPSD-208ENST00000454134 hCG_1642624A0A1W2PR95 340 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 GNAQP50148 359 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 CCDC82Q8N4S0 544 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 GUCD1Q96NT3 240 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 NEK1Q96PY6 1258 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 LZTS2Q9BRK4 669 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 IL23AQ9NPF7 189 aa19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 SEC63Q9UGP8 760 aaKnown RBP19.01■□□□□ 0.63
NCKIPSD-208ENST00000454134 SUPT20HL2P0C7V6 817 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 CALM1P0DP23 149 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 CALM2P0DP24 149 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 CALM3P0DP25 149 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 SMARCA1P28370 1054 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 CCND2P30279 289 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 ADCK5Q3MIX3 580 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 NFRKBQ6P4R8 1299 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 MICU3Q86XE3 530 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 DHX37Q8IY37 1157 aaKnown RBP19■□□□□ 0.63
NCKIPSD-208ENST00000454134 GPKOWQ92917 476 aaPredicted RBP eCLIP19■□□□□ 0.63
NCKIPSD-208ENST00000454134 SCLYQ96I15 445 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 STXBP5LQ9Y2K9 1186 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 COL6A3P12111 3177 aa19■□□□□ 0.63
NCKIPSD-208ENST00000454134 PSRC1Q6PGN9 363 aaPredicted RBP18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 USP17L6PQ6QN14 398 aa18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 FANCBQ8NB91 859 aa18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 KAT2BQ92831 832 aa18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 EMID1Q96A84 441 aaPredicted RBP18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 TTYH1Q9H313 450 aaPredicted RBP18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 SEMA6BQ9H3T3 888 aa18.99■□□□□ 0.63
NCKIPSD-208ENST00000454134 MYH7BA7E2Y1 1941 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 GRXCR1A8MXD5 290 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 ZNF286BP0CG31 522 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 CASTP20810 708 aaKnown RBP18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 MRPS9P82933 396 aaKnown RBP18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 EXOSC10Q01780 885 aaKnown RBP18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 SP2Q02086 613 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 LAMC2Q13753 1193 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 DGKDQ16760 1214 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 TMTC3Q6ZXV5 915 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 SGMS1Q86VZ5 419 aa18.98■□□□□ 0.63
NCKIPSD-208ENST00000454134 MEIS2O14770 477 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 GGPS1O95749 300 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 FGBP02675 491 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 UBA1P22314 1058 aaKnown RBP18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 PTPN11Q06124 597 aaPredicted RBP18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 TSGA10IPQ3SY00 556 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 CELF3Q5SZQ8 465 aaKnown RBP18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 RASIP1Q5U651 963 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 MYSM1Q5VVJ2 828 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 APOA5Q6Q788 366 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 SYNE3Q6ZMZ3 975 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 DHX32Q7L7V1 743 aaKnown RBP18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 OTOP2Q7RTS6 562 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 PPTC7Q8NI37 304 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 SMARCC2Q8TAQ2 1214 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 VWCEQ96DN2 955 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 BCAS3Q9H6U6 928 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 RTEL1Q9NZ71 1219 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 CXXC1Q9P0U4 656 aaPredicted RBP18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 BRPF3Q9ULD4 1205 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 FRMPD4Q14CM0 1322 aa18.97■□□□□ 0.63
NCKIPSD-208ENST00000454134 CPA1P15085 419 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 DNAJB2P25686 324 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 PTGISQ16647 500 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 HSDL1Q3SXM5 330 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 GDF6Q6KF10 455 aaPredicted RBP18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 KCNV1Q6PIU1 500 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 HERVK_113Q902F9 699 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 CUL5Q93034 780 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 SPATA33Q96N06 139 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 CDX2Q99626 313 aaPredicted RBP18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 ALG1Q9BT22 464 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 NOD1Q9Y239 953 aa18.96■□□□□ 0.63
NCKIPSD-208ENST00000454134 PBX2P40425 430 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms