RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 FOXD2O60548 495 aaPredicted RBP6□□□□□ -1.45
USP40-209ENST00000452724 ECI1P42126 302 aa6□□□□□ -1.45
USP40-209ENST00000452724 KCNJ6P48051 423 aa6□□□□□ -1.45
USP40-209ENST00000452724 KCNC1P48547 511 aa6□□□□□ -1.45
USP40-209ENST00000452724 GFRA1P56159 465 aa6□□□□□ -1.45
USP40-209ENST00000452724 SF1Q15637 639 aaKnown RBP6□□□□□ -1.45
USP40-209ENST00000452724 LILRB2Q8N423 598 aa6□□□□□ -1.45
USP40-209ENST00000452724 ZBTB38Q8NAP3 1195 aaPredicted RBP6□□□□□ -1.45
USP40-209ENST00000452724 COPS5Q92905 334 aa6□□□□□ -1.45
USP40-209ENST00000452724 IER2Q9BTL4 223 aa6□□□□□ -1.45
USP40-209ENST00000452724 XYLT2Q9H1B5 865 aa6□□□□□ -1.45
USP40-209ENST00000452724 GULP1Q9UBP9 304 aa6□□□□□ -1.45
USP40-209ENST00000452724 HCFC2Q9Y5Z7 792 aa6□□□□□ -1.45
USP40-209ENST00000452724 OTOL1A6NHN0 477 aaPredicted RBP5.99□□□□□ -1.45
USP40-209ENST00000452724 PRODHO43272 600 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 CPP00450 1065 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 SCG5P05408 212 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 THBDP07204 575 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 ASGR2P07307 311 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 FAM153BP0C7A2 387 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 FGFR1P11362 822 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 FBLN1P23142 703 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 CYP4F3Q08477 520 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 YOD1Q5VVQ6 348 aaPredicted RBP5.99□□□□□ -1.45
USP40-209ENST00000452724 WWC2Q6AWC2 1192 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 NOP9Q86U38 636 aaKnown RBP5.99□□□□□ -1.45
USP40-209ENST00000452724 CXorf38Q8TB03 319 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 FEZF2Q8TBJ5 459 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 MMP19Q99542 508 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 GPRC5CQ9NQ84 441 aa5.99□□□□□ -1.45
USP40-209ENST00000452724 C7orf72A4D263 438 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 PABPC1P11940 636 aaKnown RBP5.98□□□□□ -1.45
USP40-209ENST00000452724 PLS3P13797 630 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 ATF2P15336 505 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 MAP4K2Q12851 820 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 LONRF2Q1L5Z9 754 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 PRSS53Q2L4Q9 553 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 C2orf27AQ580R0 203 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 NSMFQ6X4W1 530 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 B3GNT8Q7Z7M8 397 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 DCP2Q8IU60 420 aaKnown RBP5.98□□□□□ -1.45
USP40-209ENST00000452724 ZDHHC14Q8IZN3 488 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 JMYQ8N9B5 988 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 TMEM145Q8NBT3 493 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 NPLOC4Q8TAT6 608 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 THAP3Q8WTV1 239 aaPredicted RBP5.98□□□□□ -1.45
USP40-209ENST00000452724 KCTD13Q8WZ19 329 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 OSBP2Q969R2 916 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 TEPSINQ96N21 525 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 CDC6Q99741 560 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 MTA3Q9BTC8 594 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 AP5M1Q9H0R1 490 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 CLEC1BQ9P126 229 aa5.98□□□□□ -1.45
USP40-209ENST00000452724 FFAR3O14843 346 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 DLX3O60479 287 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 FUCA1P04066 466 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 PMLP29590 882 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 BUD31P41223 144 aaPredicted RBP5.97□□□□□ -1.45
USP40-209ENST00000452724 SLC35F1Q5T1Q4 408 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 IQCEQ6IPM2 695 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 FRMD5Q7Z6J6 570 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 SH3TC2Q8TF17 1288 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 FNIP1Q8TF40 1166 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 FRS2Q8WU20 508 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 CPA5Q8WXQ8 436 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 C1orf159Q96HA4 380 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 IPO9Q96P70 1041 aaKnown RBP5.97□□□□□ -1.45
USP40-209ENST00000452724 RXFP1Q9HBX9 757 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 PCDH18Q9HCL0 1135 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 USP40Q9NVE5 1235 aa5.97□□□□□ -1.45
USP40-209ENST00000452724 TRBV23-1A0A0A0MS06 115 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 SLURP1P55000 103 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 ZC3H12BQ5HYM0 836 aaKnown RBP5.96□□□□□ -1.46
USP40-209ENST00000452724 FAM209AQ5JX71 171 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 ACBD5Q5T8D3 534 aaPredicted RBP5.96□□□□□ -1.46
USP40-209ENST00000452724 FOXB2Q5VYV0 432 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 SCUBE1Q8IWY4 988 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 PPIL6Q8IXY8 311 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 TP53I13Q8NBR0 393 aaPredicted RBP5.96□□□□□ -1.46
USP40-209ENST00000452724 SYT8Q8NBV8 401 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 KREMEN2Q8NCW0 462 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 ZSWIM2Q8NEG5 633 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 MARCH2Q9P0N8 246 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 PTCH2Q9Y6C5 1203 aa5.96□□□□□ -1.46
USP40-209ENST00000452724 SH3D21A4FU49 640 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 MEFVO15553 781 aaPredicted RBP5.95□□□□□ -1.46
USP40-209ENST00000452724 MYO1BO43795 1136 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 NTRK1P04629 796 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 MC3RP41968 323 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 HTRA3P83110 453 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 CACNB2Q08289 660 aaPredicted RBP5.95□□□□□ -1.46
USP40-209ENST00000452724 KCNAB2Q13303 367 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 VWA3BQ502W6 1294 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 E4F1Q66K89 784 aaPredicted RBP5.95□□□□□ -1.46
USP40-209ENST00000452724 DENND5AQ6IQ26 1287 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 LIPIQ6XZB0 460 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 TTLL7Q6ZT98 887 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 SAPCD2Q86UD0 394 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 JAZF1Q86VZ6 243 aa5.95□□□□□ -1.46
USP40-209ENST00000452724 EXOC2Q96KP1 924 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms