RNA–Protein interactions for RNA: ENST00000451492.5

USP54-207, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 509 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-207ENST00000451492 GH1P01241 217 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 MMP3P08254 477 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 CALM1P0DP23 149 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 CALM2P0DP24 149 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 CALM3P0DP25 149 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 ACRP10323 421 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 CSF2RAP15509 400 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 CCND2P30279 289 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 LIFRP42702 1097 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 ARHGAP1Q07960 439 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 USP17L6PQ6QN14 398 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 TMTC2Q8N394 836 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 DEFB123Q8N688 67 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 GPKOWQ92917 476 aaPredicted RBP eCLIP11.18□□□□□ -0.62
USP54-207ENST00000451492 CUL5Q93034 780 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 JAKMIP1Q96N16 626 aaKnown RBP11.18□□□□□ -0.62
USP54-207ENST00000451492 MTG1Q9BT17 334 aaPredicted RBP11.18□□□□□ -0.62
USP54-207ENST00000451492 MTA3Q9BTC8 594 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 HIPK3Q9H422 1215 aa11.18□□□□□ -0.62
USP54-207ENST00000451492 TRMT13Q9NUP7 481 aaKnown RBP11.18□□□□□ -0.62
USP54-207ENST00000451492 CNTNAP5Q8WYK1 1306 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 COL6A3P12111 3177 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 EIF3JO75822 258 aaKnown RBP11.17□□□□□ -0.62
USP54-207ENST00000451492 CD4P01730 458 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 ZNF286BP0CG31 522 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 CYP2C9P11712 490 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 GNAQP50148 359 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 TRAF1Q13077 416 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 KRT32Q14532 448 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 UBE2SQ16763 222 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 NBPF20Q3BBV1 942 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 MFSD5Q6N075 450 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 CCDC62Q6P9F0 684 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 APOA5Q6Q788 366 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 TMTC3Q6ZXV5 915 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 HEATR3Q7Z4Q2 680 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 DHX37Q8IY37 1157 aaKnown RBP11.17□□□□□ -0.62
USP54-207ENST00000451492 FANCBQ8NB91 859 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 SLC43A3Q8NBI5 491 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 SCLYQ96I15 445 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 MAP3K14Q99558 947 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.17□□□□□ -0.62
USP54-207ENST00000451492 ALG1Q9BT22 464 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 ALDH8A1Q9H2A2 487 aaPredicted RBP11.17□□□□□ -0.62
USP54-207ENST00000451492 BRPF3Q9ULD4 1205 aa11.17□□□□□ -0.62
USP54-207ENST00000451492 A6NJR5 290 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 RBAK-RBAKDNI3L0D1 243 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 ZBTB43O43298 467 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 RGS20O76081 388 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 GGPS1O95749 300 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 GHRHRQ02643 423 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 APOBRQ0VD83 1088 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 PPIGQ13427 754 aaKnown RBP eCLIP11.16□□□□□ -0.62
USP54-207ENST00000451492 RTN1Q16799 776 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 Q6ZUG5 572 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 DHX32Q7L7V1 743 aaKnown RBP11.16□□□□□ -0.62
USP54-207ENST00000451492 SGMS1Q86VZ5 419 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 TMEM199Q8N511 208 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 LZTS2Q9BRK4 669 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 MAF1Q9H063 256 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 RTEL1Q9NZ71 1219 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 DDX41Q9UJV9 622 aaKnown RBP11.16□□□□□ -0.62
USP54-207ENST00000451492 NOD1Q9Y239 953 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 SNX14Q9Y5W7 946 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 EYSQ5T1H1 3165 aa11.16□□□□□ -0.62
USP54-207ENST00000451492 PTPRSQ13332 1948 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 CASTP20810 708 aaKnown RBP11.15□□□□□ -0.62
USP54-207ENST00000451492 UBA1P22314 1058 aaKnown RBP11.15□□□□□ -0.62
USP54-207ENST00000451492 EXOSC10Q01780 885 aaKnown RBP11.15□□□□□ -0.62
USP54-207ENST00000451492 SP4Q02446 784 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 ZNF697Q5TEC3 545 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 BLOC1S2Q6QNY1 142 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 BRF1Q92994 677 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 PGBD1Q96JS3 809 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 SPATA33Q96N06 139 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 NOC4LQ9BVI4 516 aaKnown RBP11.15□□□□□ -0.62
USP54-207ENST00000451492 WNT8AQ9H1J5 351 aa11.15□□□□□ -0.62
USP54-207ENST00000451492 RBM28Q9NW13 759 aaKnown RBP11.15□□□□□ -0.62
USP54-207ENST00000451492 MAP3K20Q9NYL2 800 aaKnown RBP11.15□□□□□ -0.62
USP54-207ENST00000451492 MEIS2O14770 477 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 PPFIA3O75145 1194 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 REC8O95072 547 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 CDC27P30260 824 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 HSPA4P34932 840 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 METAP2P50579 478 aaKnown RBP eCLIP11.14□□□□□ -0.63
USP54-207ENST00000451492 NAPAP54920 295 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 MRPS9P82933 396 aaKnown RBP11.14□□□□□ -0.63
USP54-207ENST00000451492 SP2Q02086 613 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 DGKDQ16760 1214 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 HSDL1Q3SXM5 330 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 WWC2Q6AWC2 1192 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 FAM109BQ6ICB4 259 aaPredicted RBP11.14□□□□□ -0.63
USP54-207ENST00000451492 ZNF365Q70YC5 407 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 DEFB128Q7Z7B8 93 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 VSIG10LQ86VR7 867 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 SAMD3Q8N6K7 520 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 BCAS3Q9H6U6 928 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 PSTPIP2Q9H939 334 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 MLXIPQ9HAP2 919 aa11.14□□□□□ -0.63
USP54-207ENST00000451492 PPP4R2Q9NY27 417 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms