RNA–Protein interactions for RNA: ENST00000449058.6

TOM1-210, Transcript of target of myb1 membrane trafficking protein, human

APPRIS P3 TSL 1 (best) BASIC

Gene TOM1, Length 2,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TOM1-210	ENST00000449058	SAR1B	Q9Y6B6	198 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	ENC1	O14682	589 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	IPO7	O95373	1038 aa	Known RBP	18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	VSNL1	P62760	191 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	LRRC55	Q6ZSA7	311 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	ABCB6	Q9NP58	842 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	HDAC6	Q9UBN7	1215 aa		18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	DDX25	Q9UHL0	483 aa	Known RBP	18.84	■□□□□ 0.61
TOM1-210	ENST00000449058	ZBTB5	O15062	677 aa		18.83	■□□□□ 0.61
TOM1-210	ENST00000449058	MRPL12	P52815	198 aa	Known RBP	18.83	■□□□□ 0.61
TOM1-210	ENST00000449058	ECM1	Q16610	540 aa		18.83	■□□□□ 0.61
TOM1-210	ENST00000449058	CDC42EP5	Q6NZY7	148 aa		18.83	■□□□□ 0.61
TOM1-210	ENST00000449058	HDX	Q7Z353	690 aa		18.83	■□□□□ 0.61
TOM1-210	ENST00000449058	GCFC2	P16383	781 aa	Known RBP	18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	VAV2	P52735	878 aa		18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	HYI	Q5T013	277 aa		18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	WDR93	Q6P2C0	686 aa		18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	HHIPL2	Q6UWX4	724 aa		18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	DNAJC19	Q96DA6	116 aa		18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	ZC3H12C	Q9C0D7	883 aa	Known RBP	18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	ZCCHC17	Q9NP64	241 aa	Known RBP	18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	ATF5	Q9Y2D1	282 aa	Predicted RBP	18.83	■□□□□ 0.6
TOM1-210	ENST00000449058	NRXN2	Q9P2S2	1712 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	ANO9	A1A5B4	782 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	USP17L10	C9JJH3	530 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	ZNF263	O14978	683 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	EPHB6	O15197	1021 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	SEPT2	Q15019	361 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	CCDC84	Q86UT8	332 aa	Predicted RBP	18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	MXD3	Q9BW11	206 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	GBP3	Q9H0R5	595 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	SIPA1L1	O43166	1804 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	IDE	P14735	1019 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	SLC16A2	P36021	539 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	EHD4	Q9H223	541 aa		18.82	■□□□□ 0.6
TOM1-210	ENST00000449058	SCNN1D	P51172	638 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	CYP27A1	Q02318	531 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	CCDC96	Q2M329	555 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	APOBEC3H	Q6NTF7	200 aa	Known RBP	18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	PROM2	Q8N271	834 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	CCDC42	Q96M95	316 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	MMS19	Q96T76	1030 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	TSGA10	Q9BZW7	698 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	PSTPIP2	Q9H939	334 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	ARHGAP20	Q9P2F6	1191 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	AFF2	P51816	1311 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058		H3BQF6	201 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	LCA5L	O95447	670 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	HLA-DOA	P06340	250 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	ZCWPW2	Q504Y3	356 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	KCTD1	Q719H9	257 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	GLIS3	Q8NEA6	775 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	RPGRIP1	Q96KN7	1286 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	NAP1L4	Q99733	375 aa	Known RBP	18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	DUSP10	Q9Y6W6	482 aa		18.81	■□□□□ 0.6
TOM1-210	ENST00000449058	PLEK	P08567	350 aa	Predicted RBP	18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	USP14	P54578	494 aa		18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	KIF5A	Q12840	1032 aa		18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	COASY	Q13057	564 aa		18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	TEKT1	Q969V4	418 aa		18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	CCDC17	Q96LX7	622 aa		18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	FAM207A	Q9NSI2	230 aa	Predicted RBP	18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	PCDHA12	Q9UN75	941 aa		18.8	■□□□□ 0.6
TOM1-210	ENST00000449058	SRGAP2	O75044	1071 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	LRRC41	Q15345	812 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	SPA17	Q15506	151 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	MYOCD	Q8IZQ8	938 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	TSG101	Q99816	390 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	KDM3A	Q9Y4C1	1321 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	MPHOSPH10	O00566	681 aa	Known RBP	18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	CKAP4	Q07065	602 aa	Known RBP	18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	DOK7	Q18PE1	504 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	C2CD5	Q86YS7	1000 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	BAP1	Q92560	729 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	GJA10	Q969M2	543 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	EDEM3	Q9BZQ6	932 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	NT5C3A	Q9H0P0	336 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	GLT8D2	Q9H1C3	349 aa		18.79	■□□□□ 0.6
TOM1-210	ENST00000449058	NFIA	Q12857	509 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	MEX3C	Q5U5Q3	659 aa	Known RBP	18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	KRT26	Q7Z3Y9	468 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	SECISBP2L	Q93073	1101 aa	Known RBP	18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	DNAJC18	Q9H819	358 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	MMRN2	Q9H8L6	949 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	SUGCT	Q9HAC7	445 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	COL11A2	P13942	1736 aa	Predicted RBP	18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	SLC26A4	O43511	780 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	NPR1	P16066	1061 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	HSPA1L	P34931	641 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	ATP2B2	Q01814	1243 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	MKL1	Q969V6	931 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	PANK4	Q9NVE7	773 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	TRPC5	Q9UL62	973 aa	Predicted RBP	18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	PCDHA13	Q9Y5I0	950 aa		18.78	■□□□□ 0.6
TOM1-210	ENST00000449058	MACROD2	A1Z1Q3	448 aa		18.77	■□□□□ 0.6
TOM1-210	ENST00000449058	EIF4A3	P38919	411 aa	Known RBP	18.77	■□□□□ 0.6
TOM1-210	ENST00000449058	KIF11	P52732	1056 aa		18.77	■□□□□ 0.6
TOM1-210	ENST00000449058	CASP8	Q14790	479 aa		18.77	■□□□□ 0.6
TOM1-210	ENST00000449058	FAM26F	Q5R3K3	315 aa		18.77	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms