RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 GOLGA8AA7E2F4 631 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 GOLGA8BA8MQT2 603 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 PIK3CDO00329 1044 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 MEIS2O14770 477 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 KIAA0355O15063 1070 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 RGS20O76081 388 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 MYL3P08590 195 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 ITGB8P26012 769 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 CPT1AP50416 773 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 FXR1P51114 621 aaKnown RBP eCLIP14.69□□□□□ -0.065e-6■■■□□ 17
PRPF40A-203ENST00000448428 RCAN1P53805 252 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 PSMC6P62333 389 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 PURAQ00577 322 aaKnown RBP14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 ITGA7Q13683 1181 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 RUFY3Q7L099 469 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 SLC43A3Q8NBI5 491 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 SMARCC2Q8TAQ2 1214 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 CUL5Q93034 780 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 UBE2OQ9C0C9 1292 aaKnown RBP14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 PSTPIP2Q9H939 334 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 ZSWIM6Q9HCJ5 1215 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 TMEM39AQ9NV64 488 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 POLR3EQ9NVU0 708 aa14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 V9GY48 417 aaPredicted RBP14.69□□□□□ -0.06
PRPF40A-203ENST00000448428 MROH7Q68CQ1 1323 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 GH1P01241 217 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 CCND2P30279 289 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 ADD1P35611 737 aaKnown RBP14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 ARHGAP1Q07960 439 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 HEATR3Q7Z4Q2 680 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 GPKOWQ92917 476 aaPredicted RBP eCLIP14.68□□□□□ -0.064e-6■■□□□ 11.8
PRPF40A-203ENST00000448428 BADQ92934 168 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 MRVI1Q9Y6F6 885 aa14.68□□□□□ -0.06
PRPF40A-203ENST00000448428 FRMPD4Q14CM0 1322 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 RAG1P15918 1043 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 METAP2P50579 478 aaKnown RBP eCLIP14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 MRPS9P82933 396 aaKnown RBP14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 BRDTQ58F21 947 aaPredicted RBP14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 WWC2Q6AWC2 1192 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 FAM126BQ8IXS8 530 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 AFG1LQ8WV93 481 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 MTG1Q9BT17 334 aaPredicted RBP14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 TM6SF1Q9BZW5 370 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 CYP46A1Q9Y6A2 500 aa14.67□□□□□ -0.06
PRPF40A-203ENST00000448428 TRIOBPQ9H2D6 2365 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 SCN10AQ9Y5Y9 1956 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 CCDC196A0A1B0GTZ2 297 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 KPNA6O60684 536 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 CD4P01730 458 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 EVCP57679 992 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 SP2Q02086 613 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 TOB2Q14106 344 aaPredicted RBP14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 TYW1BQ6NUM6 668 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 KCNV1Q6PIU1 500 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 TDHQ8IZJ6 230 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 RTEL1Q9NZ71 1219 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 TBX21Q9UL17 535 aa14.66□□□□□ -0.06
PRPF40A-203ENST00000448428 DOCK5Q9H7D0 1870 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 TLR3O15455 904 aaKnown RBP14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 STAM2O75886 525 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 TGFB3P10600 412 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 PDIA3P30101 505 aaKnown RBP14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 LAMC2Q13753 1193 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 UBE2SQ16763 222 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 MYSM1Q5VVJ2 828 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 DHX37Q8IY37 1157 aaKnown RBP14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 EMID1Q96A84 441 aaPredicted RBP14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 SEZ6LQ9BYH1 1024 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 UPF3BQ9BZI7 483 aaKnown RBP14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 TRPV6Q9H1D0 765 aa14.65□□□□□ -0.06
PRPF40A-203ENST00000448428 NID2Q14112 1375 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 SPATA31C2B4DYI2 1134 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 STXBP3O00186 592 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 SOX1O00570 391 aaPredicted RBP14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 SORBS3O60504 671 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 TIMP1P01033 207 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 MMP3P08254 477 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 NAPAP54920 295 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 NTRK3Q16288 839 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 NBPF20Q3BBV1 942 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 CELF3Q5SZQ8 465 aaKnown RBP14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 PCNX4Q63HM2 1172 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 PPP1R13LQ8WUF5 828 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 INPP4AQ96PE3 977 aaPredicted RBP14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 LARP6Q9BRS8 491 aaKnown RBP14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 BCAS3Q9H6U6 928 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 RIC8AQ9NPQ8 531 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 BARHL2Q9NY43 387 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 PCDHA6Q9UN73 950 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 PCDHA8Q9Y5H6 950 aa14.64□□□□□ -0.07
PRPF40A-203ENST00000448428 SMCO2A6NFE2 343 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 PRPF3O43395 683 aaKnown RBP14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 B4GALT4O60513 344 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 SLC34A2O95436 690 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 GGPS1O95749 300 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 ICAM3P32942 547 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 EPHB4P54760 987 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 CCT2P78371 535 aaKnown RBP14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 SHHQ15465 462 aa14.63□□□□□ -0.07
PRPF40A-203ENST00000448428 PFKFB3Q16875 520 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms