RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 CASC1Q6TDU7 716 aa24.05■■□□□ 1.44
SDC1-205ENST00000447124 KAT2BQ92831 832 aa24.05■■□□□ 1.44
SDC1-205ENST00000447124 GRXCR1A8MXD5 290 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 GCOM1H8Y6P7 765 aaPredicted RBP24.04■■□□□ 1.44
SDC1-205ENST00000447124 DDAH1O94760 285 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 MMP3P08254 477 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 POLR2MP0CAP2 368 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 PGM5Q15124 567 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 NFRKBQ6P4R8 1299 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 FCHSD1Q86WN1 690 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 SLC17A8Q8NDX2 589 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 SCLYQ96I15 445 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 TMEM87BQ96K49 555 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 CDX2Q99626 313 aaPredicted RBP24.04■■□□□ 1.44
SDC1-205ENST00000447124 LRRC2Q9BYS8 371 aa24.04■■□□□ 1.44
SDC1-205ENST00000447124 SUPT20HL2P0C7V6 817 aa24.03■■□□□ 1.44
SDC1-205ENST00000447124 TRAF1Q13077 416 aa24.03■■□□□ 1.44
SDC1-205ENST00000447124 FAM47CQ5HY64 1035 aa24.03■■□□□ 1.44
SDC1-205ENST00000447124 TMTC2Q8N394 836 aa24.03■■□□□ 1.44
SDC1-205ENST00000447124 SRBD1Q8N5C6 995 aaKnown RBP24.03■■□□□ 1.44
SDC1-205ENST00000447124 HERVK_113Q902F9 699 aa24.03■■□□□ 1.44
SDC1-205ENST00000447124 SPZ1Q9BXG8 430 aa24.03■■□□□ 1.44
SDC1-205ENST00000447124 CXXC1Q9P0U4 656 aaPredicted RBP24.03■■□□□ 1.44
SDC1-205ENST00000447124 PLEKHA8P1O95397 391 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 FGBP02675 491 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 RXRAP19793 462 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 SMARCA1P28370 1054 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 LIFRP42702 1097 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 PSRC1Q6PGN9 363 aaPredicted RBP24.02■■□□□ 1.44
SDC1-205ENST00000447124 CMTR1Q8N1G2 835 aaKnown RBP24.02■■□□□ 1.44
SDC1-205ENST00000447124 CTCFLQ8NI51 663 aaPredicted RBP24.02■■□□□ 1.44
SDC1-205ENST00000447124 GPKOWQ92917 476 aaPredicted RBP eCLIP24.02■■□□□ 1.44
SDC1-205ENST00000447124 MRVI1Q9Y6F6 885 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 KIAA1217Q5T5P2 1943 aa24.02■■□□□ 1.44
SDC1-205ENST00000447124 SP2Q02086 613 aa24.01■■□□□ 1.43
SDC1-205ENST00000447124 PTPN11Q06124 597 aaPredicted RBP24.01■■□□□ 1.43
SDC1-205ENST00000447124 NFXL1Q6ZNB6 911 aa24.01■■□□□ 1.43
SDC1-205ENST00000447124 RAB11FIP4Q86YS3 637 aa24.01■■□□□ 1.43
SDC1-205ENST00000447124 EMID1Q96A84 441 aaPredicted RBP24.01■■□□□ 1.43
SDC1-205ENST00000447124 CCDC69A6NI79 296 aa24■■□□□ 1.43
SDC1-205ENST00000447124 CASTP20810 708 aaKnown RBP24■■□□□ 1.43
SDC1-205ENST00000447124 KIF5BP33176 963 aa24■■□□□ 1.43
SDC1-205ENST00000447124 PBX2P40425 430 aa24■■□□□ 1.43
SDC1-205ENST00000447124 CHMP4BP1P59074 171 aa24■■□□□ 1.43
SDC1-205ENST00000447124 LAMC2Q13753 1193 aa24■■□□□ 1.43
SDC1-205ENST00000447124 RASEFQ8IZ41 740 aa24■■□□□ 1.43
SDC1-205ENST00000447124 CTAGE1Q96RT6 745 aa24■■□□□ 1.43
SDC1-205ENST00000447124 BCAS3Q9H6U6 928 aa24■■□□□ 1.43
SDC1-205ENST00000447124 SORBS3O60504 671 aa23.99■■□□□ 1.43
SDC1-205ENST00000447124 DNAJB2P25686 324 aa23.99■■□□□ 1.43
SDC1-205ENST00000447124 MRPS9P82933 396 aaKnown RBP23.99■■□□□ 1.43
SDC1-205ENST00000447124 MYSM1Q5VVJ2 828 aa23.99■■□□□ 1.43
SDC1-205ENST00000447124 OTOP2Q7RTS6 562 aa23.99■■□□□ 1.43
SDC1-205ENST00000447124 DHX37Q8IY37 1157 aaKnown RBP23.99■■□□□ 1.43
SDC1-205ENST00000447124 RRP36Q96EU6 259 aaKnown RBP23.99■■□□□ 1.43
SDC1-205ENST00000447124 LZTS2Q9BRK4 669 aa23.99■■□□□ 1.43
SDC1-205ENST00000447124 A0A0C4DFX4 3053 aa23.99■■□□□ 1.43
SDC1-205ENST00000447124 GNAQP50148 359 aa23.98■■□□□ 1.43
SDC1-205ENST00000447124 EXOSC10Q01780 885 aaKnown RBP23.98■■□□□ 1.43
SDC1-205ENST00000447124 DGKDQ16760 1214 aa23.98■■□□□ 1.43
SDC1-205ENST00000447124 CELF3Q5SZQ8 465 aaKnown RBP23.98■■□□□ 1.43
SDC1-205ENST00000447124 GDF6Q6KF10 455 aaPredicted RBP23.98■■□□□ 1.43
SDC1-205ENST00000447124 USP17L6PQ6QN14 398 aa23.98■■□□□ 1.43
SDC1-205ENST00000447124 RPUSD2Q8IZ73 545 aaKnown RBP23.98■■□□□ 1.43
SDC1-205ENST00000447124 MYLIPQ8WY64 445 aa23.98■■□□□ 1.43
SDC1-205ENST00000447124 PBX4Q9BYU1 374 aa23.98■■□□□ 1.43
SDC1-205ENST00000447124 TMEM265A0A087WTH1 108 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 MEIS2O14770 477 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 CCND2P30279 289 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 GRIN2CQ14957 1233 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 HSDL1Q3SXM5 330 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 TSGA10IPQ3SY00 556 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 KCNV1Q6PIU1 500 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 SESTD1Q86VW0 696 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 SGMS1Q86VZ5 419 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 FANCBQ8NB91 859 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 PPTC7Q8NI37 304 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 NEK1Q96PY6 1258 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 SLC12A7Q9Y666 1083 aa23.97■■□□□ 1.43
SDC1-205ENST00000447124 FRMPD4Q14CM0 1322 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 hCG_1642624A0A1W2PR95 340 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 HAS3O00219 553 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 CDC45O75419 566 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 GGPS1O95749 300 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 TGFB3P10600 412 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 HOXD8P13378 290 aaPredicted RBP23.96■■□□□ 1.43
SDC1-205ENST00000447124 PSEN2P49810 448 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 ADCK5Q3MIX3 580 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 CCDC82Q8N4S0 544 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 TIFAQ96CG3 184 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 TCEANC2Q96MN5 208 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 RTEL1Q9NZ71 1219 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 HDAC6Q9UBN7 1215 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 MYO9BQ13459 2157 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 MYH7BA7E2Y1 1941 aa23.96■■□□□ 1.43
SDC1-205ENST00000447124 IQCF3P0C7M6 154 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 CALM1P0DP23 149 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 CALM2P0DP24 149 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 CALM3P0DP25 149 aa23.95■■□□□ 1.42
SDC1-205ENST00000447124 UBA1P22314 1058 aaKnown RBP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 88.3 ms