RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 PAK2Q13177 524 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 IRF2BP1Q8IU81 584 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 FNBP4Q8N3X1 1017 aaPredicted RBP13.11□□□□□ -0.31
MSH6-204ENST00000445503 CCSER1Q9C0I3 900 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 CUEDC2Q9H467 287 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 SNX12Q9UMY4 172 aa13.11□□□□□ -0.31
MSH6-204ENST00000445503 LRRC10BA6NIK2 292 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 PDE2AO00408 941 aaPredicted RBP13.1□□□□□ -0.31
MSH6-204ENST00000445503 MRPL12P52815 198 aaKnown RBP13.1□□□□□ -0.31
MSH6-204ENST00000445503 RPS6KA1Q15418 735 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 LRRC31Q6UY01 552 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 ABCC6O95255 1503 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 NAA35Q5VZE5 725 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 CEP95Q96GE4 821 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 DNAJC7Q99615 494 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 DDX25Q9UHL0 483 aaKnown RBP13.1□□□□□ -0.31
MSH6-204ENST00000445503 STXBP3O00186 592 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 MYL1P05976 194 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 ADAM9Q13443 819 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 KCTD19Q17RG1 926 aaPredicted RBP13.1□□□□□ -0.31
MSH6-204ENST00000445503 WDR59Q6PJI9 974 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 SLF2Q8IX21 1173 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 CNBD1Q8NA66 436 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 SH3GLB2Q9NR46 395 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 CCNL1Q9UK58 526 aaPredicted RBP13.1□□□□□ -0.31
MSH6-204ENST00000445503 GOLGA6L7A0A1B0GV03 622 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 MYMKA6NI61 221 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 TBCAO75347 108 aaKnown RBP13.1□□□□□ -0.31
MSH6-204ENST00000445503 PALMO75781 387 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 GTF2IP78347 998 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.1□□□□□ -0.311e-6■■■■■ 44.2
MSH6-204ENST00000445503 PSD3Q9NYI0 1048 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 STIM2Q9P246 746 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 PCDHB13Q9Y5F0 798 aa13.1□□□□□ -0.31
MSH6-204ENST00000445503 ATRNO75882 1429 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 TMEM110-MUSTN1A8MSY1 372 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 MEIS1O00470 390 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 BRD2P25440 801 aaKnown RBP13.09□□□□□ -0.31
MSH6-204ENST00000445503 NAALADL2Q58DX5 795 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 KCTD1Q719H9 257 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 DUSP9Q99956 384 aaKnown RBP13.09□□□□□ -0.31
MSH6-204ENST00000445503 IL17RBQ9NRM6 502 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 ANO9A1A5B4 782 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 MYBL2P10244 700 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 EPHB4P54760 987 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 NNTQ13423 1086 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 FBXO33Q7Z6M2 555 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 C8orf37Q96NL8 207 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 EHD4Q9H223 541 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 FKBP3Q00688 224 aaKnown RBP13.09□□□□□ -0.31
MSH6-204ENST00000445503 CYP4A11Q02928 519 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 TCP10Q12799 353 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 USH1GQ495M9 461 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 MAD2L2Q9UI95 211 aa13.09□□□□□ -0.31
MSH6-204ENST00000445503 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.09□□□□□ -0.31
MSH6-204ENST00000445503 GOLGA8KD6RF30 607 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 E7EVH7 732 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 PLCG2P16885 1265 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 SCNN1DP51172 638 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 NPY5RQ15761 445 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 RCSD1Q6JBY9 416 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 WDR93Q6P2C0 686 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 MICALCLQ6ZW33 695 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 TNFRSF25Q93038 417 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 AP1M1Q9BXS5 423 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 MAGEF1Q9HAY2 307 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 KBTBD4Q9NVX7 518 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 CAPN7Q9Y6W3 813 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 ARFGEF2Q9Y6D5 1785 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 CHMP2AO43633 222 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 DPH5Q9H2P9 285 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 PSTPIP2Q9H939 334 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 COL4A3BPQ9Y5P4 624 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 E9PMD0 336 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 PPP1R12BO60237 982 aaPredicted RBP13.08□□□□□ -0.32
MSH6-204ENST00000445503 PABPC4Q13310 644 aaKnown RBP eCLIP13.08□□□□□ -0.32
MSH6-204ENST00000445503 UNC13DQ70J99 1090 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 GOLPH3Q9H4A6 298 aa13.08□□□□□ -0.32
MSH6-204ENST00000445503 RBM12Q9NTZ6 932 aaKnown RBP13.08□□□□□ -0.32
MSH6-204ENST00000445503 CYTH3O43739 400 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 KRT14P02533 472 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 ABCB4P21439 1286 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 MAGEA9P43362 315 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 TMED8Q6PL24 325 aaPredicted RBP13.07□□□□□ -0.32
MSH6-204ENST00000445503 MARCH10Q8NA82 808 aaPredicted RBP13.07□□□□□ -0.32
MSH6-204ENST00000445503 SEMA6BQ9H3T3 888 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 ARHGAP20Q9P2F6 1191 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 GGA1Q9UJY5 639 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 KRT13P13646 458 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 AMPD2Q01433 879 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 ZFYVE27Q5T4F4 411 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 PAPD7Q5XG87 772 aaKnown RBP13.07□□□□□ -0.32
MSH6-204ENST00000445503 DNAAF5Q86Y56 855 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 KIF13AQ9H1H9 1805 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 NPHP3-ACAD11A0A0J9YXS1 232 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 HLA-DOAP06340 250 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 APBA1Q02410 837 aa13.07□□□□□ -0.32
MSH6-204ENST00000445503 SF3B3Q15393 1217 aaKnown RBP13.07□□□□□ -0.32
MSH6-204ENST00000445503 IFI16Q16666 785 aaKnown RBP13.07□□□□□ -0.32
MSH6-204ENST00000445503 PRR16Q569H4 304 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 134.6 ms