RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RANBP2P49792 3224 aaKnown RBP17.49■□□□□ 0.39
LIMS3-201ENST00000437679 A0A1W2PPC1 479 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 PIK3CDO00329 1044 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 KPNA6O60684 536 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 GH1P01241 217 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 MYL3P08590 195 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 CDC27P30260 824 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 CDK7P50613 346 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 LY6KQ17RY6 165 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 KCNV1Q6PIU1 500 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 USP17L6PQ6QN14 398 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 SEZ6LQ9BYH1 1024 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 AGXT2Q9BYV1 514 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 TM6SF1Q9BZW5 370 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 UBE2OQ9C0C9 1292 aaKnown RBP17.49■□□□□ 0.39
LIMS3-201ENST00000437679 TMEM39AQ9NV64 488 aa17.49■□□□□ 0.39
LIMS3-201ENST00000437679 V9GY48 417 aaPredicted RBP17.49■□□□□ 0.39
LIMS3-201ENST00000437679 A6NJR5 290 aa17.48■□□□□ 0.39
LIMS3-201ENST00000437679 MEIS2O14770 477 aa17.48■□□□□ 0.39
LIMS3-201ENST00000437679 TLR3O15455 904 aaKnown RBP17.48■□□□□ 0.39
LIMS3-201ENST00000437679 FUT2Q10981 343 aa17.48■□□□□ 0.39
LIMS3-201ENST00000437679 ITGA7Q13683 1181 aa17.48■□□□□ 0.39
LIMS3-201ENST00000437679 SH3RF1Q7Z6J0 888 aa17.48■□□□□ 0.39
LIMS3-201ENST00000437679 IL31RAQ8NI17 732 aa17.48■□□□□ 0.39
LIMS3-201ENST00000437679 GPKOWQ92917 476 aaPredicted RBP eCLIP17.48■□□□□ 0.39
LIMS3-201ENST00000437679 FAM217BQ9NTX9 383 aaPredicted RBP17.48■□□□□ 0.39
LIMS3-201ENST00000437679 DDX41Q9UJV9 622 aaKnown RBP17.48■□□□□ 0.39
LIMS3-201ENST00000437679 FRMPD4Q14CM0 1322 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 TRIM43BA6NCK2 446 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 hCG_1984214I3L0E3 225 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 STAM2O75886 525 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 ADD1P35611 737 aaKnown RBP17.47■□□□□ 0.39
LIMS3-201ENST00000437679 NAPAP54920 295 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 PURAQ00577 322 aaKnown RBP17.47■□□□□ 0.39
LIMS3-201ENST00000437679 FAAP100Q0VG06 881 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 GNPTABQ3T906 1256 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 WWC2Q6AWC2 1192 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 PPP1R18Q6NYC8 613 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 ZNF713Q8N859 430 aaPredicted RBP17.47■□□□□ 0.39
LIMS3-201ENST00000437679 TRIM43Q96BQ3 446 aaPredicted RBP17.47■□□□□ 0.39
LIMS3-201ENST00000437679 MTG1Q9BT17 334 aaPredicted RBP17.47■□□□□ 0.39
LIMS3-201ENST00000437679 PCDH10Q9P2E7 1040 aa17.47■□□□□ 0.39
LIMS3-201ENST00000437679 NID2Q14112 1375 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 KIAA0355O15063 1070 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 TGFB3P10600 412 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 RAG1P15918 1043 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 PSMC6P62333 389 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 ARHGAP1Q07960 439 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 LAMC2Q13753 1193 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 FAM126BQ8IXS8 530 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 DHX37Q8IY37 1157 aaKnown RBP17.46■□□□□ 0.39
LIMS3-201ENST00000437679 SLC43A3Q8NBI5 491 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 AFG1LQ8WV93 481 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 BADQ92934 168 aa17.46■□□□□ 0.39
LIMS3-201ENST00000437679 UPF3BQ9BZI7 483 aaKnown RBP17.46■□□□□ 0.39
LIMS3-201ENST00000437679 MYH7BA7E2Y1 1941 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 LTBP2Q14767 1821 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 SPDYE3A6NKU9 549 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 RGS20O76081 388 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 EVCP57679 992 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 AKAP17AQ02040 695 aaKnown RBP17.45■□□□□ 0.38
LIMS3-201ENST00000437679 UBE2SQ16763 222 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 XRRA1Q6P2D8 792 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 TDHQ8IZJ6 230 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 EMID1Q96A84 441 aaPredicted RBP17.45■□□□□ 0.38
LIMS3-201ENST00000437679 ZFP91Q96JP5 570 aaPredicted RBP17.45■□□□□ 0.38
LIMS3-201ENST00000437679 EHMT1Q9H9B1 1298 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 PDRG1Q9NUG6 133 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 GRIN2DO15399 1336 aa17.45■□□□□ 0.38
LIMS3-201ENST00000437679 MMP3P08254 477 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 PDIA3P30101 505 aaKnown RBP17.44■□□□□ 0.38
LIMS3-201ENST00000437679 ANAPC15P60006 121 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 MRPS9P82933 396 aaKnown RBP17.44■□□□□ 0.38
LIMS3-201ENST00000437679 TOB2Q14106 344 aaPredicted RBP17.44■□□□□ 0.38
LIMS3-201ENST00000437679 PFKFB3Q16875 520 aaPredicted RBP17.44■□□□□ 0.38
LIMS3-201ENST00000437679 PCNX4Q63HM2 1172 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 TEX2Q8IWB9 1127 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 GLT8D2Q9H1C3 349 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 RIC8AQ9NPQ8 531 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 BARHL2Q9NY43 387 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 RTEL1Q9NZ71 1219 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 TBX21Q9UL17 535 aa17.44■□□□□ 0.38
LIMS3-201ENST00000437679 SCN10AQ9Y5Y9 1956 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 SMCO2A6NFE2 343 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 STXBP3O00186 592 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 GGPS1O95749 300 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 SCG2P13521 617 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 FXR1P51114 621 aaKnown RBP eCLIP17.43■□□□□ 0.38
LIMS3-201ENST00000437679 ADCY7P51828 1080 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 CCT2P78371 535 aaKnown RBP17.43■□□□□ 0.38
LIMS3-201ENST00000437679 DGKDQ16760 1214 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 FAM47CQ5HY64 1035 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 CELF3Q5SZQ8 465 aaKnown RBP17.43■□□□□ 0.38
LIMS3-201ENST00000437679 PPTC7Q8NI37 304 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 INPP4AQ96PE3 977 aaPredicted RBP17.43■□□□□ 0.38
LIMS3-201ENST00000437679 MLXIPQ9HAP2 919 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 PCDHA6Q9UN73 950 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 PCDHA8Q9Y5H6 950 aa17.43■□□□□ 0.38
LIMS3-201ENST00000437679 PRPF3O43395 683 aaKnown RBP17.42■□□□□ 0.38
LIMS3-201ENST00000437679 FIBPO43427 364 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms