RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 BUB1BO60566 1050 aaPredicted RBP9.58□□□□□ -0.88
USP40-203ENST00000427112 DNM2P50570 870 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 MNAT1P51948 309 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 FAM182AQ5T1J6 154 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 SV2BQ7L1I2 683 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 AMOTL1Q8IY63 956 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 C4orf32Q8N8J7 132 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 MSANTD4Q8NCY6 345 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 SPATA4Q8NEY3 305 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 DDX12PQ92771 950 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 CCDC113Q9H0I3 377 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 ACBD3Q9H3P7 528 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 KIAA1024Q9UPX6 916 aa9.58□□□□□ -0.88
USP40-203ENST00000427112 EIF4E1BA6NMX2 242 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 AGPSO00116 658 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 MYO1FO00160 1098 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 STXBP3O00186 592 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 CEP104O60308 925 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 USO1O60763 962 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 HEXIM1O94992 359 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 TUBB4AP04350 444 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 GTF2IP78347 998 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 PABPC4Q13310 644 aaKnown RBP eCLIP9.57□□□□□ -0.88
USP40-203ENST00000427112 ZYXQ15942 572 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 KIAA0753Q2KHM9 967 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 OSBPL9Q96SU4 736 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 CAPN11Q9UMQ6 739 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 LOC102724159A0A0B4J2E5 919 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 POTEB3A0JP26 581 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 POTECB2RU33 542 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 PAFAH1B1P43034 410 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 PWP2Q15269 919 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 CCDC70Q6NSX1 233 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 POTEBQ6S5H4 581 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 REXO1Q8N1G1 1221 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 FAM71BQ8TC56 605 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 GBP3Q9H0R5 595 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 ZBTB12Q9Y330 459 aaPredicted RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 PCDHB13Q9Y5F0 798 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 FRMD3A2A2Y4 597 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 KLRC1P26715 233 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 CALML3P27482 149 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 TMOD1P28289 359 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 LONP1P36776 959 aaKnown RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 USP8P40818 1118 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 CDK8P49336 464 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 MIIPQ5JXC2 388 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 CCNI2Q6ZMN8 369 aaPredicted RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 FNBP4Q8N3X1 1017 aaPredicted RBP9.57□□□□□ -0.88
USP40-203ENST00000427112 FAM84AQ96KN4 292 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 UBXN6Q9BZV1 441 aa9.57□□□□□ -0.88
USP40-203ENST00000427112 ZBTB39O15060 712 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 CCNE1P24864 410 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 HOXA13P31271 388 aaPredicted RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 RDXP35241 583 aaKnown RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 MFSD14BQ5SR56 506 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 CEP85LQ5SZL2 805 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 NEK8Q86SG6 692 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 KIRREL3Q8IZU9 778 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 CAPS2Q9BXY5 557 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 CELF4Q9BZC1 486 aaKnown RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 DDX47Q9H0S4 455 aaKnown RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 DNAJC17Q9NVM6 304 aaKnown RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 C4AP0C0L4 1744 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 C4BP0C0L5 1744 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 POTEFA5A3E0 1075 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 DDAH1O94760 285 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 PRPF6O94906 941 aaKnown RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 POTEIP0CG38 1075 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 KCNA1Q09470 495 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 ZNF211Q13398 564 aaPredicted RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 POTEGQ6S5H5 508 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 POTEEQ6S8J3 1075 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 ZNF507Q8TCN5 953 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 UBLCP1Q8WVY7 318 aaPredicted RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 RAB21Q9UL25 225 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 ZNF652Q9Y2D9 606 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 CAPN7Q9Y6W3 813 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 MYH6P13533 1939 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 CENPFP49454 3210 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 ERVV-1B6SEH8 477 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 G3V3G9 751 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 TULP2O00295 520 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 SORBS3O60504 671 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 SRGNP10124 158 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 SLC9A1P19634 815 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 DCAF8Q5TAQ9 597 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 TICAM2Q86XR7 235 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 GIMAP8Q8ND71 665 aaPredicted RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 ZNF512BQ96KM6 892 aaPredicted RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 ZIM3Q96PE6 472 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 MMTAG2Q9BU76 263 aaKnown RBP9.56□□□□□ -0.88
USP40-203ENST00000427112 ADAM33Q9BZ11 813 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 LRRC4CQ9HCJ2 640 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 ZBTB21Q9ULJ3 1066 aa9.56□□□□□ -0.88
USP40-203ENST00000427112 USP17L10C9JJH3 530 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 POTEB2H3BUK9 544 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 DDX39AO00148 427 aaKnown RBP9.55□□□□□ -0.88
USP40-203ENST00000427112 AKR1B1P15121 316 aa9.55□□□□□ -0.88
USP40-203ENST00000427112 RASA1P20936 1047 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms