RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 STK4Q13043 487 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 IFI16Q16666 785 aaKnown RBP12.19□□□□□ -0.46
LIMS1-207ENST00000422797 HAUS3Q68CZ6 603 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 TYW1BQ6NUM6 668 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 PPP1R18Q6NYC8 613 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 FOXR1Q6PIV2 292 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 KDM7AQ6ZMT4 941 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 YTHDF3Q7Z739 585 aaKnown RBP12.19□□□□□ -0.46
LIMS1-207ENST00000422797 ZNF444Q8N0Y2 327 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-207ENST00000422797 ARFGAP2Q8N6H7 521 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 C3orf20Q8ND61 904 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 WDR66Q8TBY9 1149 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 GDF3Q9NR23 364 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 RGS17Q9UGC6 210 aaPredicted RBP12.19□□□□□ -0.46
LIMS1-207ENST00000422797 MYH1P12882 1939 aa12.19□□□□□ -0.46
LIMS1-207ENST00000422797 PP2D1A8MPX8 630 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 ZNF263O14978 683 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 ZNF185O15231 689 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 CCNT1O60563 726 aaKnown RBP12.18□□□□□ -0.46
LIMS1-207ENST00000422797 KIAA0754O94854 1291 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 ERLIN2O94905 339 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 MYBL2P10244 700 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 GTF2A1P52655 376 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-207ENST00000422797 PPP4CP60510 307 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 TNNC1P63316 161 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 CYP27A1Q02318 531 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 ASTE1Q2TB18 679 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-207ENST00000422797 CFAP58Q5T655 872 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 LRIG3Q6UXM1 1119 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 CACNA2D4Q7Z3S7 1137 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 REM2Q8IYK8 340 aaPredicted RBP12.18□□□□□ -0.46
LIMS1-207ENST00000422797 BCAS4Q8TDM0 211 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 CEP89Q96ST8 783 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 LRRC1Q9BTT6 524 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 SEMA6BQ9H3T3 888 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 CAPN6Q9Y6Q1 641 aa12.18□□□□□ -0.46
LIMS1-207ENST00000422797 HMGB1P1B2RPK0 211 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-207ENST00000422797 MOCS3O95396 460 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 SETQ01105 290 aaPredicted RBP12.17□□□□□ -0.46
LIMS1-207ENST00000422797 LETM2Q2VYF4 491 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 SWT1Q5T5J6 900 aaKnown RBP12.17□□□□□ -0.46
LIMS1-207ENST00000422797 RRAGAQ7L523 313 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 PACS2Q86VP3 889 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 REXO1Q8N1G1 1221 aaKnown RBP12.17□□□□□ -0.46
LIMS1-207ENST00000422797 KIAA0895Q8NCT3 520 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 RASGRP4Q8TDF6 673 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 BAP1Q92560 729 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 LARP4BQ92615 738 aaKnown RBP12.17□□□□□ -0.46
LIMS1-207ENST00000422797 MMRN2Q9H8L6 949 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 IL17RBQ9NRM6 502 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 FAM169AQ9Y6X4 670 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 GRIN2DO15399 1336 aa12.17□□□□□ -0.46
LIMS1-207ENST00000422797 SMCO2A6NFE2 343 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 LRRC53A6NM62 1247 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 SMIM22K7EJ46 135 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MYCNP04198 464 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 CYP2D6P10635 497 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 PLCG2P16885 1265 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 GUCY2CP25092 1073 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 INPP5BP32019 993 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 CCT5P48643 541 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 KLK7P49862 253 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MARSP56192 900 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 RPS8P62241 208 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 FKBP3Q00688 224 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 DRP2Q13474 957 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 PLCB4Q15147 1175 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 SFMBT2Q5VUG0 894 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 KRT79Q5XKE5 535 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 RAD54LQ92698 747 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 TLR10Q9BXR5 811 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MLXIPQ9HAP2 919 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 BMP2KQ9NSY1 1161 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 DMGDHQ9UI17 866 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 PCDHGC5Q9Y5F6 944 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 COL4A3BPQ9Y5P4 624 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 BZW2Q9Y6E2 419 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 DUSP10Q9Y6W6 482 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 KDM3AQ9Y4C1 1321 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 C10orf71Q711Q0 1435 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 GOLGA6L10A6NI86 522 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 KLRF2D3W0D1 207 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 ZMYND10O75800 440 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 LDHBP07195 334 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 FCER1AP12319 257 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 VEGFAP15692 232 aaPredicted RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 EHHADHQ08426 723 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 CUL1Q13616 776 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 NAB2Q15742 525 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 CALCRLQ16602 461 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 ERFEQ4G0M1 354 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 TMEM119Q4V9L6 283 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MCTP2Q6DN12 878 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 NFRKBQ6P4R8 1299 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 LRRC55Q6ZSA7 311 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 GSPT2Q8IYD1 628 aaKnown RBP12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MYOCDQ8IZQ8 938 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 MICALL1Q8N3F8 863 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 STAG2Q8N3U4 1231 aa12.16□□□□□ -0.46
LIMS1-207ENST00000422797 RIN2Q8WYP3 895 aaPredicted RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms