RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 IFFO1Q0D2I5 559 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 PPP2R5AQ15172 486 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 VWA3BQ502W6 1294 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 TAX1BP1Q86VP1 789 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 TAF1DQ9H5J8 278 aaPredicted RBP11.81□□□□□ -0.52
USP54-204ENST00000422491 MYH3P11055 1940 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 LRP5O75197 1615 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 FAM205AQ6ZU69 1335 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 TMOD1P28289 359 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 E2F5Q15329 346 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 HGSNATQ68CP4 663 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 DTHD1Q6ZMT9 781 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 RRAGAQ7L523 313 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 GPIHBP1Q8IV16 184 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 HELBQ8NG08 1087 aaPredicted RBP11.81□□□□□ -0.52
USP54-204ENST00000422491 SDR42E1Q8WUS8 393 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 CCT6BQ92526 530 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 TATDN2Q93075 761 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 PLIN2Q99541 437 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 ISCUQ9H1K1 167 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 NDST4Q9H3R1 872 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 TMEM59LQ9UK28 342 aa11.81□□□□□ -0.52
USP54-204ENST00000422491 BAZ2BQ9UIF8 2168 aaKnown RBP11.81□□□□□ -0.52
USP54-204ENST00000422491 SSU72P8A0A1W2PR75 194 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 ZPR1O75312 459 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 PALMO75781 387 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 DNAJC8O75937 253 aaPredicted RBP11.8□□□□□ -0.52
USP54-204ENST00000422491 CLNS1AP54105 237 aaKnown RBP11.8□□□□□ -0.52
USP54-204ENST00000422491 ERVK-9P63128 1117 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 PDE4DQ08499 809 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 BIRC3Q13489 604 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 PFKFB3Q16875 520 aaPredicted RBP11.8□□□□□ -0.52
USP54-204ENST00000422491 ARMC9Q7Z3E5 817 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 TMC4Q7Z404 712 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 CACNA2D3Q8IZS8 1091 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 OR2W6PQ8NHA6 318 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 RASSF8Q8NHQ8 419 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 P3H4Q92791 437 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 TRIM9Q9C026 710 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 TMEM60Q9H2L4 133 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 CNOT8Q9UFF9 292 aaKnown RBP11.8□□□□□ -0.52
USP54-204ENST00000422491 TNS2Q63HR2 1409 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 ADAMTSL3P82987 1691 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 A0A1B0GUA9 196 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 ECM2O94769 699 aaPredicted RBP11.8□□□□□ -0.52
USP54-204ENST00000422491 FCER1AP12319 257 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 UBA7P41226 1012 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 RAPGEF5Q92565 580 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 SEMA6BQ9H3T3 888 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 ZNF330Q9Y3S2 320 aaPredicted RBP11.8□□□□□ -0.52
USP54-204ENST00000422491 FLT1P17948 1338 aa11.8□□□□□ -0.52
USP54-204ENST00000422491 BHMG1C9JSJ3 638 aaPredicted RBP11.79□□□□□ -0.52
USP54-204ENST00000422491 NEBLO76041 1014 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 FTCDO95954 541 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 GHRP10912 638 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 PPP1R2P41236 205 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 COBLL1Q53SF7 1204 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 CCDC178Q5BJE1 867 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 MEI1Q5TIA1 1274 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 LRCH2Q5VUJ6 765 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 PDXDC1Q6P996 788 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 ADGRA1Q86SQ6 560 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 USP38Q8NB14 1042 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 TRIM6Q9C030 488 aaPredicted RBP11.79□□□□□ -0.52
USP54-204ENST00000422491 KDM4CQ9H3R0 1056 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 MMRN2Q9H8L6 949 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 PCDHGC5Q9Y5F6 944 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 ERVV-2B6SEH9 535 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 SNAP23O00161 211 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 BACH1O14867 736 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 DNA2P51530 1060 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 PPP2R2AP63151 447 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 PPARDQ03181 441 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 NBPF9Q3BBW0 867 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 CENPPQ6IPU0 288 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 CCDC84Q86UT8 332 aaPredicted RBP11.79□□□□□ -0.52
USP54-204ENST00000422491 NLRP10Q86W26 655 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 FMNL3Q8IVF7 1028 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 BLIDQ8IZY5 108 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 KIAA0895Q8NCT3 520 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 CUEDC2Q9H467 287 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 MAGEF1Q9HAY2 307 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 RREB1Q92766 1687 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 ATP6V1G2O95670 118 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 SLC5A1P13866 664 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 TNNC1P63316 161 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 ELF3P78545 371 aaPredicted RBP11.79□□□□□ -0.52
USP54-204ENST00000422491 NAB2Q15742 525 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 AGBL2Q5U5Z8 902 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 KIF6Q6ZMV9 814 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 RUFY4Q6ZNE9 571 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 MAB21L3Q8N8X9 362 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 HVCN1Q96D96 273 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 C7orf25Q9BPX7 421 aa11.79□□□□□ -0.52
USP54-204ENST00000422491 PACSIN2Q9UNF0 486 aaPredicted RBP11.79□□□□□ -0.52
USP54-204ENST00000422491 MROH5Q6ZUA9 1318 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 PPIP5K2O43314 1243 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 FGRP09769 529 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 PLCG1P19174 1290 aa11.78□□□□□ -0.52
USP54-204ENST00000422491 DRD4P21917 467 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms