RNA–Protein interactions for RNA: ENST00000420121.5

SSBP3-206, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 593 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-206ENST00000420121 TRMT13Q9NUP7 481 aaKnown RBP12.82□□□□□ -0.36
SSBP3-206ENST00000420121 MAP3K20Q9NYL2 800 aaKnown RBP12.82□□□□□ -0.36
SSBP3-206ENST00000420121 DDX41Q9UJV9 622 aaKnown RBP12.82□□□□□ -0.36
SSBP3-206ENST00000420121 A0A0C4DFX4 3053 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 PNMA6FA0A0J9YX94 578 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 PRC1O43663 620 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 DDAH1O94760 285 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 MMP3P08254 477 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 NBPF20Q3BBV1 942 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 ARHGEF16Q5VV41 709 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 ZNF365Q70YC5 407 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 CATIPQ7Z7H3 387 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 TMEM199Q8N511 208 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 SAMD3Q8N6K7 520 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 AFG1LQ8WV93 481 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 KAT2BQ92831 832 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 CTAGE1Q96RT6 745 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 SPZ1Q9BXG8 430 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 SEMA6BQ9H3T3 888 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 IL23AQ9NPF7 189 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 FRMPD4Q14CM0 1322 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 CHD7Q9P2D1 2997 aa12.81□□□□□ -0.36
SSBP3-206ENST00000420121 EIF3JO75822 258 aaKnown RBP12.8□□□□□ -0.36
SSBP3-206ENST00000420121 PLEKHA8P1O95397 391 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 GH1P01241 217 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 CYP2C9P11712 490 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 MCM5P33992 734 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 CCL23P55773 120 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 PGM5Q15124 567 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 ZNF697Q5TEC3 545 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 VSIG10LQ86VR7 867 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 EMID1Q96A84 441 aaPredicted RBP12.8□□□□□ -0.36
SSBP3-206ENST00000420121 ANO2Q9NQ90 1003 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 CXXC1Q9P0U4 656 aaPredicted RBP12.8□□□□□ -0.36
SSBP3-206ENST00000420121 PRUNE2Q8WUY3 3088 aa12.8□□□□□ -0.36
SSBP3-206ENST00000420121 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 GRXCR1A8MXD5 290 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 KPNA6O60684 536 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 HOXD8P13378 290 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 RXRAP19793 462 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 SMARCA1P28370 1054 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 LIFRP42702 1097 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 SP2Q02086 613 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 NFRKBQ6P4R8 1299 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 PSRC1Q6PGN9 363 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 SRBD1Q8N5C6 995 aaKnown RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 HERVK_113Q902F9 699 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 GPKOWQ92917 476 aaPredicted RBP eCLIP12.79□□□□□ -0.361e-8■■□□□ 12.3
SSBP3-206ENST00000420121 SCLYQ96I15 445 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 ZFP91Q96JP5 570 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 TMEM87BQ96K49 555 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 CDX2Q99626 313 aaPredicted RBP12.79□□□□□ -0.36
SSBP3-206ENST00000420121 LRRC2Q9BYS8 371 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 MYO9BQ13459 2157 aa12.79□□□□□ -0.36
SSBP3-206ENST00000420121 GCOM1H8Y6P7 765 aaPredicted RBP12.78□□□□□ -0.36
SSBP3-206ENST00000420121 POLR2MP0CAP2 368 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 MYCLP12524 364 aaPredicted RBP12.78□□□□□ -0.36
SSBP3-206ENST00000420121 DNAJB2P25686 324 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 MRPS9P82933 396 aaKnown RBP12.78□□□□□ -0.36
SSBP3-206ENST00000420121 PTPN11Q06124 597 aaPredicted RBP12.78□□□□□ -0.36
SSBP3-206ENST00000420121 BRDTQ58F21 947 aaPredicted RBP12.78□□□□□ -0.36
SSBP3-206ENST00000420121 CASC1Q6TDU7 716 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 SGMS1Q86VZ5 419 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 RASEFQ8IZ41 740 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 CMTR1Q8N1G2 835 aaKnown RBP12.78□□□□□ -0.36
SSBP3-206ENST00000420121 PIBF1Q8WXW3 757 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 BCAS3Q9H6U6 928 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 MRVI1Q9Y6F6 885 aa12.78□□□□□ -0.36
SSBP3-206ENST00000420121 TMEM265A0A087WTH1 108 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 HAS3O00219 553 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 MEIS2O14770 477 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 SUPT20HL2P0C7V6 817 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 KIF5BP33176 963 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 PBX2P40425 430 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 EXOSC10Q01780 885 aaKnown RBP12.77□□□□□ -0.37
SSBP3-206ENST00000420121 TRAF1Q13077 416 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 SEMA3FQ13275 785 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 ADCK5Q3MIX3 580 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 FAM47CQ5HY64 1035 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 MYSM1Q5VVJ2 828 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 GDF6Q6KF10 455 aaPredicted RBP12.77□□□□□ -0.37
SSBP3-206ENST00000420121 SESTD1Q86VW0 696 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 FCHSD1Q86WN1 690 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 RAB11FIP4Q86YS3 637 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 TMTC2Q8N394 836 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 PPTC7Q8NI37 304 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 CTCFLQ8NI51 663 aaPredicted RBP12.77□□□□□ -0.37
SSBP3-206ENST00000420121 PBX4Q9BYU1 374 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 TRANK1O15050 2925 aa12.77□□□□□ -0.37
SSBP3-206ENST00000420121 CUL9Q8IWT3 2517 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 CCDC69A6NI79 296 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 RBAK-RBAKDNI3L0D1 243 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 PIK3CDO00329 1044 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 F2P00734 622 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 FGBP02675 491 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 UBA1P22314 1058 aaKnown RBP12.76□□□□□ -0.37
SSBP3-206ENST00000420121 CCND2P30279 289 aa12.76□□□□□ -0.37
SSBP3-206ENST00000420121 MKRN4PQ13434 485 aaPredicted RBP12.76□□□□□ -0.37
SSBP3-206ENST00000420121 LAMC2Q13753 1193 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms