RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 MTMR9Q96QG7 549 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 TMEM60Q9H2L4 133 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 NDST4Q9H3R1 872 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 KAT14Q9H8E8 782 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 IL17RBQ9NRM6 502 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 CEP72Q9P209 647 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 SNED1Q8TER0 1413 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 HMGB1P1B2RPK0 211 aaPredicted RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PLCG1P19174 1290 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 MECOMQ03112 1051 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PDE4DQ08499 809 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 CFAP221Q4G0U5 840 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 HGSNATQ68CP4 663 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PDXDC1Q6P996 788 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 LRRC55Q6ZSA7 311 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 MICALL1Q8N3F8 863 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PRPF38AQ8NAV1 312 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 PNMA1Q8ND90 353 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 LRRC15Q8TF66 581 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 STAMQ92783 540 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 NOX5Q96PH1 765 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 MMTAG2Q9BU76 263 aaKnown RBP6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 TLR10Q9BXR5 811 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 SEMA6BQ9H3T3 888 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 ZNF287Q9HBT7 754 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 SLAIN2Q9P270 581 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 FBXL5Q9UKA1 691 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 MINPP1Q9UNW1 487 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 DAAM1Q9Y4D1 1078 aa6.36□□□□□ -1.39
CCDC88A-203ENST00000412148 ONECUT3O60422 494 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 HSF2BPO75031 334 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 SERPING1P05155 500 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 HSPA9P38646 679 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 CRKLP46109 303 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 MTIF2P46199 727 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 DYNLL1P63167 89 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 STK4Q13043 487 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 NONOQ15233 471 aaKnown RBP eCLIP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 NAB2Q15742 525 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 TMEM119Q4V9L6 283 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 KLHDC7AQ5VTJ3 777 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 PPP4R3AQ6IN85 833 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 MICALCLQ6ZW33 695 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 NEK8Q86SG6 692 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 CAGE1Q8TC20 777 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 P3H4Q92791 437 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 CALML4Q96GE6 196 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 AIPL1Q9NZN9 384 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 LRWD1Q9UFC0 647 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 CAPN6Q9Y6Q1 641 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 RGPD3A6NKT7 1758 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 RGPD4Q7Z3J3 1758 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 TSPY2A6NKD2 308 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 SRGAP2O75044 1071 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 PAEPP09466 180 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 CUL1Q13616 776 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 TYW1BQ6NUM6 668 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 ARMC9Q7Z3E5 817 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 SEC14L1Q92503 715 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 INPP4AQ96PE3 977 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 NAP1L4Q99733 375 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 LRRC1Q9BTT6 524 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 EPN3Q9H201 632 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 C6orf50Q9HD87 102 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 JADE2Q9NQC1 790 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 BLOC1S4Q9NUP1 217 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 DMGDHQ9UI17 866 aaKnown RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 ZNF330Q9Y3S2 320 aaPredicted RBP6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 FAM169AQ9Y6X4 670 aa6.35□□□□□ -1.39
CCDC88A-203ENST00000412148 ADAMTS3O15072 1205 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 ZNF185O15231 689 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 CYTH3O43739 400 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 GFPT2O94808 682 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 ERLIN2O94905 339 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 FNTAP49354 379 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 GSCP56915 257 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 GSTO1P78417 241 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 C2orf54Q08AI8 447 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 CDC37Q16543 378 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 TXNRD1Q16881 649 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 SLC35G1Q2M3R5 365 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 MEI1Q5TIA1 1274 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 MCTP2Q6DN12 878 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 C8orf74Q6P047 294 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 SND1Q7KZF4 910 aaKnown RBP eCLIP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 SV2BQ7L1I2 683 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 TEX2Q8IWB9 1127 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 RAB34Q9BZG1 259 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 RIOX1Q9H6W3 641 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 PLCB1Q9NQ66 1216 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 INTUQ9ULD6 942 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 NENFQ9UMX5 172 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 BZW2Q9Y6E2 419 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 MYO3BQ8WXR4 1341 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 CNTNAP4Q9C0A0 1308 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 BAZ2BQ9UIF8 2168 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 A0A0A6YYK5 440 aaPredicted RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 EIF4A3P38919 411 aaKnown RBP6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 MAGEA1P43355 309 aa6.34□□□□□ -1.39
CCDC88A-203ENST00000412148 GYG1P46976 350 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms