RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 COL23A1Q86Y22 540 aaPredicted RBP14.89□□□□□ -0.03
VPS54-203ENST00000409558 KSR1Q8IVT5 923 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 PNMA5Q96PV4 448 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 MMS19Q96T76 1030 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 BLOC1S4Q9NUP1 217 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 PACSIN2Q9UNF0 486 aaPredicted RBP14.89□□□□□ -0.03
VPS54-203ENST00000409558 RAD17O75943 681 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 RHOBTB3O94955 611 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 CNNM4Q6P4Q7 775 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 TBC1D22AQ8WUA7 517 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 CUL5Q93034 780 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 GOLPH3Q9H4A6 298 aa14.89□□□□□ -0.03
VPS54-203ENST00000409558 A0A0U1RQG5 324 aaPredicted RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 M0R2N6 131 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 TBC1D8O95759 1140 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 ARHGAP25P42331 645 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 GFPT1Q06210 699 aaPredicted RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 DNAJC21Q5F1R6 531 aaKnown RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 KRT27Q7Z3Y8 459 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 RDH13Q8NBN7 331 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 PIGOQ8TEQ8 1089 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 RIN2Q8WYP3 895 aaPredicted RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 PYM1Q9BRP8 204 aaKnown RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 CCSER1Q9C0I3 900 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 CLIC2O15247 247 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 DNM2P50570 870 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 HERVK_113P62684 666 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 RASSF7Q02833 373 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 GPR161Q8N6U8 529 aaKnown RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 PANK4Q9NVE7 773 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 MYH8P13535 1937 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 PHLPP1O60346 1717 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 GH2P01242 217 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 SHMT1P34896 483 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 EIF4A3P38919 411 aaKnown RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 KCNJ6P48051 423 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 ZNF543Q08ER8 600 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 RAPGEF1Q13905 1077 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 TBC1D5Q92609 795 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 ZBTB12Q9Y330 459 aaPredicted RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 ECM29Q5VYK3 1845 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 POLR2FP61218 127 aaKnown RBP14.88□□□□□ -0.03
VPS54-203ENST00000409558 PSMC6P62333 389 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 ICA1Q05084 483 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 KIF5AQ12840 1032 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 PROM2Q8N271 834 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 RAB34Q9BZG1 259 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 NDST4Q9H3R1 872 aa14.88□□□□□ -0.03
VPS54-203ENST00000409558 LRRC53A6NM62 1247 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 ZBTB39O15060 712 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 ZBTB22O15209 634 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 MRPL12P52815 198 aaKnown RBP14.87□□□□□ -0.03
VPS54-203ENST00000409558 CDC37Q16543 378 aaPredicted RBP14.87□□□□□ -0.03
VPS54-203ENST00000409558 NAA15Q9BXJ9 866 aaKnown RBP14.87□□□□□ -0.03
VPS54-203ENST00000409558 BICDL2A1A5D9 508 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 IL1R1P14778 569 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 ELOA2Q8IYF1 753 aaPredicted RBP14.87□□□□□ -0.03
VPS54-203ENST00000409558 IFIH1Q9BYX4 1025 aaKnown RBP14.87□□□□□ -0.03
VPS54-203ENST00000409558 RGL1Q9NZL6 768 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 SORBS3O60504 671 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 CYLC1P35663 651 aaPredicted RBP14.87□□□□□ -0.03
VPS54-203ENST00000409558 LZTS2Q9BRK4 669 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 HOMER2Q9NSB8 354 aa14.87□□□□□ -0.03
VPS54-203ENST00000409558 IRS2Q9Y4H2 1338 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 ANKRD65E5RJM6 399 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 CLSTN1O94985 981 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 LRP5O75197 1615 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 PRPF6O94906 941 aaKnown RBP14.86□□□□□ -0.03
VPS54-203ENST00000409558 ACTN1P12814 892 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 EZH2Q15910 746 aaKnown RBP14.86□□□□□ -0.03
VPS54-203ENST00000409558 ANKZF1Q9H8Y5 726 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 SNED1Q8TER0 1413 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 PNMA6FA0A0J9YX94 578 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 TMCO5BA8MYB1 307 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 KRT86O43790 486 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 ECE1P42892 770 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 CEP112Q8N8E3 955 aa14.86□□□□□ -0.03
VPS54-203ENST00000409558 TRPC5Q9UL62 973 aaPredicted RBP14.86□□□□□ -0.03
VPS54-203ENST00000409558 C21orf2O43822 256 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 EEF1GP26641 437 aaKnown RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 FAM26FQ5R3K3 315 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 APOBEC3HQ6NTF7 200 aaKnown RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 KCND1Q9NSA2 647 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 PCDHB13Q9Y5F0 798 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 SAR1BQ9Y6B6 198 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 RSPH10B2B2RC85 870 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 RSPH10BP0C881 870 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 CDAN1Q8IWY9 1227 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 RABGGTAQ92696 567 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 LSM14BQ9BX40 385 aaKnown RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 SEPT11Q9NVA2 429 aaKnown RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 H3BQF6 201 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 CCDC181Q5TID7 509 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 NFRKBQ6P4R8 1299 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 DHTKD1Q96HY7 919 aaPredicted RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 TSG101Q99816 390 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 GTPBP4Q9BZE4 634 aaKnown RBP14.85□□□□□ -0.03
VPS54-203ENST00000409558 THAP9Q9H5L6 903 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 CAPN6Q9Y6Q1 641 aa14.85□□□□□ -0.03
VPS54-203ENST00000409558 PLCH1Q4KWH8 1693 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms