RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 RASGRP4Q8TDF6 673 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 POLR3EQ9NVU0 708 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 SPDYE3A6NKU9 549 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 NR1I2O75469 434 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 HOXD10P28358 340 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 MAP2K5Q13163 448 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 NR5A1Q13285 461 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 MCTP2Q6DN12 878 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 CCDC73Q6ZRK6 1079 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 KCNG4Q8TDN1 519 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 USP6NLQ92738 828 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 RMDN3Q96TC7 470 aa15.25■□□□□ 0.03
LIMS1-204ENST00000409441 A0A1W2PQ27 194 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 A0A1W2PQ64 194 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 A0A1W2PQD8 194 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 SOWAHBA6NEL2 793 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 CAVIN2O95810 425 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 GNRH1P01148 92 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 HSPA8P11142 646 aaKnown RBP15.24■□□□□ 0.03
LIMS1-204ENST00000409441 CTCFP49711 727 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-204ENST00000409441 TYRO3Q06418 890 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 GNL2Q13823 731 aaKnown RBP15.24■□□□□ 0.03
LIMS1-204ENST00000409441 ZNF792Q3KQV3 632 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 MYSM1Q5VVJ2 828 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 NSUN6Q8TEA1 469 aaKnown RBP15.24■□□□□ 0.03
LIMS1-204ENST00000409441 SOCS4Q8WXH5 440 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 FOXP1Q9H334 677 aaPredicted RBP15.24■□□□□ 0.03
LIMS1-204ENST00000409441 SLC5A4Q9NY91 659 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 GABRQQ9UN88 632 aa15.24■□□□□ 0.03
LIMS1-204ENST00000409441 CYP2B6P20813 491 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 RGS2P41220 211 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 FLT3LGP49771 235 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 LBX1P52954 281 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 PRKCZQ05513 592 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 AP3B2Q13367 1082 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 ARHGEF16Q5VV41 709 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 ADALQ6DHV7 355 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 DNERQ8NFT8 737 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 NPLOC4Q8TAT6 608 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 FAM200AQ8TCP9 573 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 TNFRSF25Q93038 417 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 ADD3Q9UEY8 706 aaKnown RBP15.23■□□□□ 0.03
LIMS1-204ENST00000409441 SRRDQ9UH36 339 aa15.23■□□□□ 0.03
LIMS1-204ENST00000409441 NOL7Q9UMY1 257 aaKnown RBP15.23■□□□□ 0.03
LIMS1-204ENST00000409441 DIS3Q9Y2L1 958 aaKnown RBP15.23■□□□□ 0.03
LIMS1-204ENST00000409441 CCDC194A0A1B0GVG4 234 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 KIF28PB7ZC32 967 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 HOXC6P09630 235 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 MSNP26038 577 aaKnown RBP15.22■□□□□ 0.03
LIMS1-204ENST00000409441 U2AF2P26368 475 aaKnown RBP eCLIP15.22■□□□□ 0.03
LIMS1-204ENST00000409441 CEBPZQ03701 1054 aaKnown RBP15.22■□□□□ 0.03
LIMS1-204ENST00000409441 FAM160A1Q05DH4 1040 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 STK38Q15208 465 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 PIK3AP1Q6ZUJ8 805 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 KRT25Q7Z3Z0 450 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 LINC00301Q8NCQ3 95 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 ANO3Q9BYT9 981 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 PXMP2Q9NR77 195 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 MRVI1Q9Y6F6 885 aa15.22■□□□□ 0.03
LIMS1-204ENST00000409441 EIF2AK2P19525 551 aaKnown RBP15.21■□□□□ 0.03
LIMS1-204ENST00000409441 ME1P48163 572 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 CAMK4Q16566 473 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 EARS2Q5JPH6 523 aaKnown RBP15.21■□□□□ 0.03
LIMS1-204ENST00000409441 SASS6Q6UVJ0 657 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 NOSTRINQ8IVI9 506 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 MRPS27Q92552 414 aaKnown RBP15.21■□□□□ 0.03
LIMS1-204ENST00000409441 FGD4Q96M96 766 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 FTOQ9C0B1 505 aaKnown RBP eCLIP15.21■□□□□ 0.03
LIMS1-204ENST00000409441 TRIM17Q9Y577 477 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 ASTN1O14525 1302 aa15.21■□□□□ 0.03
LIMS1-204ENST00000409441 KINO60870 393 aaKnown RBP15.21■□□□□ 0.02
LIMS1-204ENST00000409441 XRCC5P13010 732 aaKnown RBP15.21■□□□□ 0.02
LIMS1-204ENST00000409441 ALDH5A1P51649 535 aaPredicted RBP15.21■□□□□ 0.02
LIMS1-204ENST00000409441 UBXN2AP68543 259 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 NONOQ15233 471 aaKnown RBP eCLIP15.21■□□□□ 0.02
LIMS1-204ENST00000409441 ANO1Q5XXA6 986 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 ZNF467Q7Z7K2 595 aaPredicted RBP15.21■□□□□ 0.02
LIMS1-204ENST00000409441 ENGASEQ8NFI3 743 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 TBCKQ8TEA7 893 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 MAML3Q96JK9 1138 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 IWS1Q96ST2 819 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 PDCD2LQ9BRP1 358 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 EHMT1Q9H9B1 1298 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 PCDHA7Q9UN72 937 aa15.21■□□□□ 0.02
LIMS1-204ENST00000409441 RPTORQ8N122 1335 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 FAM205CA6NFA0 338 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 B4DLN1 442 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 SPTLC2O15270 562 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 NR3C2P08235 984 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 SREBF1P36956 1147 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 PGM5Q15124 567 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 SF3A1Q15459 793 aaKnown RBP15.2■□□□□ 0.02
LIMS1-204ENST00000409441 INF2Q27J81 1249 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 OTOP1Q7RTM1 612 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 VSIG10LQ86VR7 867 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 FSIP1Q8NA03 581 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 APBA2Q99767 749 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 USP25Q9UHP3 1055 aa15.2■□□□□ 0.02
LIMS1-204ENST00000409441 DOCK3Q8IZD9 2030 aa15.19■□□□□ 0.02
LIMS1-204ENST00000409441 ASB14A6NK59 587 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms