RNA–Protein interactions for RNA: ENST00000397378.7

NEDD9-203, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 470 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-203ENST00000397378 STAT2P52630 851 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 NUBP1P53384 320 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 HYAL1Q12794 435 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 SLFN13Q68D06 897 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 FRMD5Q7Z6J6 570 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 FAM160B2Q86V87 743 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 FBXO11Q86XK2 927 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 TMEM192Q8IY95 271 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 SP7Q8TDD2 431 aaPredicted RBP11.19□□□□□ -0.62
NEDD9-203ENST00000397378 PANK1Q8TE04 598 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 MORC4Q8TE76 937 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 CHURC1Q8WUH1 139 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 YME1L1Q96TA2 773 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 ISY1Q9ULR0 285 aaKnown RBP11.19□□□□□ -0.62
NEDD9-203ENST00000397378 VPS13AQ96RL7 3174 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 DMDP11532 3685 aa11.19□□□□□ -0.62
NEDD9-203ENST00000397378 ZFHX4Q86UP3 3567 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 LOC730098B7Z3J9 87 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 TMEM232C9JQI7 657 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 LINC01565O15544 149 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 KPNA6O60684 536 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 CKBP12277 381 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 NDUFV1P49821 464 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 HTRA4P83105 476 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-203ENST00000397378 MCTP2Q6DN12 878 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 GDF6Q6KF10 455 aaPredicted RBP11.18□□□□□ -0.62
NEDD9-203ENST00000397378 STK11IPQ8N1F8 1099 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 LRRC47Q8N1G4 583 aaKnown RBP11.18□□□□□ -0.62
NEDD9-203ENST00000397378 NEDD1Q8NHV4 660 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 STAG1Q8WVM7 1258 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 RMDN1Q96DB5 314 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 GMCL1Q96IK5 515 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 TRERF1Q96PN7 1200 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 CYP39A1Q9NYL5 469 aa11.18□□□□□ -0.62
NEDD9-203ENST00000397378 RIF1Q5UIP0 2472 aaKnown RBP11.17□□□□□ -0.62
NEDD9-203ENST00000397378 LOC102724159A0A0B4J2E5 919 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 PRDM1O75626 825 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 UPP2O95045 317 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 PDGFBP01127 241 aaPredicted RBP11.17□□□□□ -0.62
NEDD9-203ENST00000397378 ALAS1P13196 640 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 GNAT2P19087 354 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 CTNNB1P35222 781 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 GTF2F1P35269 517 aaKnown RBP eCLIP11.17□□□□□ -0.62
NEDD9-203ENST00000397378 PWP2Q15269 919 aaKnown RBP11.17□□□□□ -0.62
NEDD9-203ENST00000397378 APPBP2Q92624 585 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 OSBP2Q969R2 916 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 RPGRIP1Q96KN7 1286 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 BCL11AQ9H165 835 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 EPB41L4AQ9HCS5 686 aaPredicted RBP11.17□□□□□ -0.62
NEDD9-203ENST00000397378 ZBTB40Q9NUA8 1239 aa11.17□□□□□ -0.62
NEDD9-203ENST00000397378 CACNA1GO43497 2377 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 LGR5O75473 907 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 MS4A1P11836 297 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 SLC1A4P43007 532 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 IKQ13123 557 aaPredicted RBP11.16□□□□□ -0.62
NEDD9-203ENST00000397378 PPP2R5BQ15173 497 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 MUM1L1Q5H9M0 696 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 NSMFQ6X4W1 530 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 ZBTB33Q86T24 672 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 KBTBD3Q8NAB2 608 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 DHX38Q92620 1227 aaKnown RBP11.16□□□□□ -0.62
NEDD9-203ENST00000397378 PURBQ96QR8 312 aaKnown RBP11.16□□□□□ -0.62
NEDD9-203ENST00000397378 INCENPQ9NQS7 918 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 DNAH14Q0VDD8 3507 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 MYO7AQ13402 2215 aa11.16□□□□□ -0.62
NEDD9-203ENST00000397378 KMT2BQ9UMN6 2715 aaPredicted RBP11.15□□□□□ -0.62
NEDD9-203ENST00000397378 RBM47A0AV96 593 aaKnown RBP11.15□□□□□ -0.62
NEDD9-203ENST00000397378 GRM6O15303 877 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 GPAA1O43292 621 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 EYA4O95677 639 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 ZFYP08048 801 aaPredicted RBP11.15□□□□□ -0.62
NEDD9-203ENST00000397378 TSPY3P0CV98 308 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 TSPY8P0CW00 308 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 TDO2P48775 406 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 PDE4BQ07343 736 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 RBL2Q08999 1139 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 CBX2Q14781 532 aaPredicted RBP11.15□□□□□ -0.62
NEDD9-203ENST00000397378 PPP4R3BQ5MIZ7 849 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 COPS5Q92905 334 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 RIPOR3Q96MK2 946 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 CTAGE1Q96RT6 745 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 LMAN2LQ9H0V9 348 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 ADD3Q9UEY8 706 aaKnown RBP11.15□□□□□ -0.62
NEDD9-203ENST00000397378 DDX19BQ9UMR2 479 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 KIAA1217Q5T5P2 1943 aa11.15□□□□□ -0.62
NEDD9-203ENST00000397378 A6NJR5 290 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 PATL2C9JE40 543 aaKnown RBP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 NKRFO15226 690 aaKnown RBP eCLIP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 RNF113AO15541 343 aaKnown RBP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 MCCP23508 829 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 ICAM3P32942 547 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 ALDH5A1P51649 535 aaPredicted RBP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 RRP1P56182 461 aaKnown RBP11.14□□□□□ -0.63
NEDD9-203ENST00000397378 TFAP4Q01664 338 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 ADAM15Q13444 863 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 PTPN21Q16825 1174 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 ZNF618Q5T7W0 954 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 RCSD1Q6JBY9 416 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 IFNL3Q8IZI9 196 aa11.14□□□□□ -0.63
NEDD9-203ENST00000397378 TMEM105Q8N8V8 129 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms