RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 KANSL2Q9H9L4 492 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 PCDHA13Q9Y5I0 950 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 COL24A1Q17RW2 1714 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 LDHCP07864 332 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 SLURP2P0DP57 97 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 NFRKBQ6P4R8 1299 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 RPGRIP1Q96KN7 1286 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 DEF6Q9H4E7 631 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 SALL4Q9UJQ4 1053 aa22.9■■□□□ 1.26
CLK3-202ENST00000395066 PDHBP11177 359 aa22.89■■□□□ 1.26
CLK3-202ENST00000395066 TNNI2P48788 182 aa22.89■■□□□ 1.26
CLK3-202ENST00000395066 RHBDL3P58872 404 aa22.89■■□□□ 1.26
CLK3-202ENST00000395066 CKAP4Q07065 602 aaKnown RBP22.89■■□□□ 1.26
CLK3-202ENST00000395066 TBC1D7Q9P0N9 293 aa22.89■■□□□ 1.26
CLK3-202ENST00000395066 APBA1Q02410 837 aa22.89■■□□□ 1.25
CLK3-202ENST00000395066 SKIDA1Q1XH10 827 aa22.89■■□□□ 1.25
CLK3-202ENST00000395066 MFSD14BQ5SR56 506 aa22.89■■□□□ 1.25
CLK3-202ENST00000395066 TMC4Q7Z404 712 aa22.89■■□□□ 1.25
CLK3-202ENST00000395066 SNX29Q8TEQ0 813 aa22.89■■□□□ 1.25
CLK3-202ENST00000395066 PLAGL2Q9UPG8 496 aa22.89■■□□□ 1.25
CLK3-202ENST00000395066 ZC3H4Q9UPT8 1303 aaKnown RBP22.88■■□□□ 1.25
CLK3-202ENST00000395066 RFC4P35249 363 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 NOP2P46087 812 aaKnown RBP22.88■■□□□ 1.25
CLK3-202ENST00000395066 SLC7A5Q01650 507 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 ZNF662Q6ZS27 426 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 CREG2Q8IUH2 290 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 DDX12PQ92771 950 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 TANGO6Q9C0B7 1094 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 EP400Q96L91 3159 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 GPR75-ASB3A0A0A6YYF3 556 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 PPFIA4O75335 1185 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 CNBD1Q8NA66 436 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 SELENOOQ9BVL4 669 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 FGFBP2Q9BYJ0 223 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 SH2D4AQ9H788 454 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 ZNF287Q9HBT7 754 aa22.88■■□□□ 1.25
CLK3-202ENST00000395066 A0A1W2PQJ5 194 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 F8W031 263 aaPredicted RBP22.87■■□□□ 1.25
CLK3-202ENST00000395066 AKR1B10O60218 316 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 GGCXP38435 758 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 GFPT1Q06210 699 aaPredicted RBP22.87■■□□□ 1.25
CLK3-202ENST00000395066 UNC13DQ70J99 1090 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 NLRC4Q9NPP4 1024 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 SNX12Q9UMY4 172 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 CACNB1Q02641 598 aaPredicted RBP22.87■■□□□ 1.25
CLK3-202ENST00000395066 RC3H1Q5TC82 1133 aaKnown RBP22.87■■□□□ 1.25
CLK3-202ENST00000395066 C8orf37Q96NL8 207 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 LRRC1Q9BTT6 524 aa22.87■■□□□ 1.25
CLK3-202ENST00000395066 DMGDHQ9UI17 866 aaKnown RBP22.87■■□□□ 1.25
CLK3-202ENST00000395066 BUB1O43683 1085 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 DNA2P51530 1060 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 CORO7P57737 925 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 ANO9A1A5B4 782 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 SSBP05455 408 aaKnown RBP eCLIP22.86■■□□□ 1.25
CLK3-202ENST00000395066 AKR1B1P15121 316 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 ADCY7P51828 1080 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 FIGNQ5HY92 759 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 TTBK2Q6IQ55 1244 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 CCNI2Q6ZMN8 369 aaPredicted RBP22.86■■□□□ 1.25
CLK3-202ENST00000395066 LRRC55Q6ZSA7 311 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 CRACR2AQ9BSW2 395 aa22.86■■□□□ 1.25
CLK3-202ENST00000395066 SLC16A2P36021 539 aa22.85■■□□□ 1.25
CLK3-202ENST00000395066 MAN2A1Q16706 1144 aa22.85■■□□□ 1.25
CLK3-202ENST00000395066 RAD54LQ92698 747 aa22.85■■□□□ 1.25
CLK3-202ENST00000395066 RIOX1Q9H6W3 641 aa22.85■■□□□ 1.25
CLK3-202ENST00000395066 ANKRD65E5RJM6 399 aa22.85■■□□□ 1.25
CLK3-202ENST00000395066 PPP1R11O60927 126 aaPredicted RBP22.84■■□□□ 1.25
CLK3-202ENST00000395066 CDK17Q00537 523 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 RASSF7Q02833 373 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 TTC31Q49AM3 519 aaPredicted RBP22.84■■□□□ 1.25
CLK3-202ENST00000395066 DPP8Q6V1X1 898 aaPredicted RBP22.84■■□□□ 1.25
CLK3-202ENST00000395066 BAP1Q92560 729 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 AGPSO00116 658 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 USO1O60763 962 aaKnown RBP22.84■■□□□ 1.25
CLK3-202ENST00000395066 TACC1O75410 805 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 SLC1A4P43007 532 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 SEMA3FQ13275 785 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 ENOX2Q16206 610 aaKnown RBP22.84■■□□□ 1.25
CLK3-202ENST00000395066 TMEM266Q2M3C6 531 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 TRIM58Q8NG06 486 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 RPGRQ92834 1020 aaKnown RBP22.84■■□□□ 1.25
CLK3-202ENST00000395066 JRKLQ9Y4A0 524 aa22.84■■□□□ 1.25
CLK3-202ENST00000395066 FXR2P51116 673 aaKnown RBP eCLIP22.83■■□□□ 1.25
CLK3-202ENST00000395066 MTMR8Q96EF0 704 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 OSBPL9Q96SU4 736 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 MTMR4Q9NYA4 1195 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 NPHP3-ACAD11A0A0J9YXS1 232 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 KCNMA1Q12791 1236 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 TDRD12Q587J7 1177 aaKnown RBP22.83■■□□□ 1.25
CLK3-202ENST00000395066 PRR5LQ6MZQ0 368 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 CACNA2D4Q7Z3S7 1137 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 PACS2Q86VP3 889 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 NELFCDQ8IXH7 590 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 GUF1Q8N442 669 aaKnown RBP22.83■■□□□ 1.25
CLK3-202ENST00000395066 PPM1EQ8WY54 764 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 MS4A14Q96JA4 679 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 TSGA10Q9BZW7 698 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 STK17AQ9UEE5 414 aa22.83■■□□□ 1.25
CLK3-202ENST00000395066 HNRNPH3P31942 346 aaKnown RBP22.82■■□□□ 1.24
CLK3-202ENST00000395066 MAGEA1P43355 309 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms