RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 HERVK_113P62684 666 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 MEX3CQ5U5Q3 659 aaKnown RBP17.78■□□□□ 0.44
PCDH1-203ENST00000394536 CCNI2Q6ZMN8 369 aaPredicted RBP17.78■□□□□ 0.44
PCDH1-203ENST00000394536 SH3RF1Q7Z6J0 888 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 DAAM2Q86T65 1068 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 TXNRD3Q86VQ6 643 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 GIMAP8Q8ND71 665 aaPredicted RBP17.78■□□□□ 0.44
PCDH1-203ENST00000394536 MYL1P05976 194 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 PABPC4Q13310 644 aaKnown RBP eCLIP17.78■□□□□ 0.44
PCDH1-203ENST00000394536 CCDC25Q86WR0 208 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 CEP95Q96GE4 821 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 GGA1Q9UJY5 639 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 CTDP1Q9Y5B0 961 aaPredicted RBP17.78■□□□□ 0.44
PCDH1-203ENST00000394536 RHOBTB3O94955 611 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 SLC1A4P43007 532 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 PRR16Q569H4 304 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 CCDC121Q6ZUS5 278 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 UHMK1Q8TAS1 419 aaKnown RBP17.78■□□□□ 0.44
PCDH1-203ENST00000394536 PKD2L1Q9P0L9 805 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 HPCAL4Q9UM19 191 aa17.78■□□□□ 0.44
PCDH1-203ENST00000394536 PSMD14O00487 310 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 PALMO75781 387 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 LLGL1Q15334 1064 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 TRAPPC3LQ5T215 181 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 C12orf60Q5U649 245 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 U2AF1L4Q8WU68 220 aaKnown RBP17.77■□□□□ 0.44
PCDH1-203ENST00000394536 CTNNBL1Q8WYA6 563 aaPredicted RBP17.77■□□□□ 0.44
PCDH1-203ENST00000394536 CUL5Q93034 780 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 AP1M1Q9BXS5 423 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 ARMCX3Q9UH62 379 aaPredicted RBP17.77■□□□□ 0.44
PCDH1-203ENST00000394536 ANAPC4Q9UJX5 808 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 SNX12Q9UMY4 172 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 GOLGA8KD6RF30 607 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 GCNT3O95395 438 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 CTNNA1P35221 906 aaKnown RBP17.77■□□□□ 0.44
PCDH1-203ENST00000394536 KCNB1Q14721 858 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 B4GALNT4Q76KP1 1039 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 TRAPPC11Q7Z392 1133 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 CCSER1Q9C0I3 900 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 TMEM51Q9NW97 253 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 CAPN6Q9Y6Q1 641 aa17.77■□□□□ 0.44
PCDH1-203ENST00000394536 NR2F2P24468 414 aa17.77■□□□□ 0.43
PCDH1-203ENST00000394536 IL17AQ16552 155 aa17.77■□□□□ 0.43
PCDH1-203ENST00000394536 ARFGAP2Q8N6H7 521 aa17.77■□□□□ 0.43
PCDH1-203ENST00000394536 MTRQ99707 1265 aa17.77■□□□□ 0.43
PCDH1-203ENST00000394536 COL4A3BPQ9Y5P4 624 aa17.77■□□□□ 0.43
PCDH1-203ENST00000394536 GCOM1H8Y6P7 765 aaPredicted RBP17.76■□□□□ 0.43
PCDH1-203ENST00000394536 HGSO14964 777 aaPredicted RBP17.76■□□□□ 0.43
PCDH1-203ENST00000394536 FAM13AO94988 1023 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 MYZAPP0CAP1 466 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 ARHGAP44Q17R89 818 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 KRT71Q3SY84 523 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 NALCNQ8IZF0 1738 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 ANO9A1A5B4 782 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 KRIT1O00522 736 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 GRM4Q14833 912 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 INTS5Q6P9B9 1019 aaKnown RBP17.76■□□□□ 0.43
PCDH1-203ENST00000394536 HDAC7Q8WUI4 952 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 MAP2K7O14733 419 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 KRT14P02533 472 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 TTI2Q6NXR4 508 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 SPATA20Q8TB22 786 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 SH3GLB2Q9NR46 395 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 RAB21Q9UL25 225 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 DNM3Q9UQ16 869 aa17.76■□□□□ 0.43
PCDH1-203ENST00000394536 E9PMD0 336 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 LMBR1Q8WVP7 490 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 MAGEF1Q9HAY2 307 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 MYMKA6NI61 221 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 CLIC2O15247 247 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 MUM1L1Q5H9M0 696 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 XRCC5P13010 732 aaKnown RBP17.75■□□□□ 0.43
PCDH1-203ENST00000394536 MAGEA9P43362 315 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 UNC13DQ70J99 1090 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 GOLPH3Q9H4A6 298 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 TSKSQ9UJT2 592 aa17.75■□□□□ 0.43
PCDH1-203ENST00000394536 GOLGA6L10A0A0M3HER8 536 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 IFT88Q13099 833 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 FAM83BQ5T0W9 1011 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 GIMAP7Q8NHV1 300 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 ZNF622Q969S3 477 aaKnown RBP eCLIP17.74■□□□□ 0.43
PCDH1-203ENST00000394536 CABS1Q96KC9 395 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 SCLT1Q96NL6 688 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 ZBTB21Q9ULJ3 1066 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 FAM169AQ9Y6X4 670 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 RGPD2P0DJD1 1756 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 PDS5AQ29RF7 1337 aaKnown RBP17.74■□□□□ 0.43
PCDH1-203ENST00000394536 EPB41P11171 864 aaKnown RBP17.74■□□□□ 0.43
PCDH1-203ENST00000394536 LRRC31Q6UY01 552 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 HS2ST1Q7LGA3 356 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 PCDHA1Q9Y5I3 950 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 RCCD1A6NED2 376 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 LRRC10BA6NIK2 292 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 FLOT1O75955 427 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 RPL13P26373 211 aaKnown RBP17.74■□□□□ 0.43
PCDH1-203ENST00000394536 SNAP25P60880 206 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 KCTD19Q17RG1 926 aaPredicted RBP17.74■□□□□ 0.43
PCDH1-203ENST00000394536 CDCA7Q9BWT1 371 aaPredicted RBP17.74■□□□□ 0.43
PCDH1-203ENST00000394536 TOPAZ1Q8N9V7 1692 aa17.74■□□□□ 0.43
PCDH1-203ENST00000394536 USP17L15C9J2P7 530 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 142.8 ms