RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 CNOT6LQ96LI5 555 aaKnown RBP10.73□□□□□ -0.69
COL6A3-204ENST00000392003 NAP1L4Q99733 375 aaKnown RBP10.73□□□□□ -0.69
COL6A3-204ENST00000392003 NOC4LQ9BVI4 516 aaKnown RBP10.73□□□□□ -0.69
COL6A3-204ENST00000392003 KCNQ5Q9NR82 932 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 CDC23Q9UJX2 597 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 MYO3BQ8WXR4 1341 aa10.73□□□□□ -0.69
COL6A3-204ENST00000392003 TTC26A0AVF1 554 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 B4DLN1 442 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 PMS1P54277 932 aaKnown RBP10.72□□□□□ -0.69
COL6A3-204ENST00000392003 KIAA1328Q86T90 577 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 RETREG2Q8NC44 543 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 LARP4BQ92615 738 aaKnown RBP10.72□□□□□ -0.69
COL6A3-204ENST00000392003 GLT8D2Q9H1C3 349 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 BMP2KQ9NSY1 1161 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-204ENST00000392003 POTEB2H3BUK9 544 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 FANCGO15287 622 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 HOXA7P31268 230 aaPredicted RBP10.72□□□□□ -0.69
COL6A3-204ENST00000392003 FXR2P51116 673 aaKnown RBP eCLIP10.72□□□□□ -0.69
COL6A3-204ENST00000392003 CHMP4BP1P59074 171 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 ERVK-24P63145 666 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 KRT83P78385 493 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 POTEAQ6S8J7 498 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 SLC35F6Q8N357 371 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 LARGE2Q8N3Y3 721 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 TSG101Q99816 390 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 ZSWIM4Q9H7M6 989 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 RIC8AQ9NPQ8 531 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 PVALEFA0A1B0GWK0 134 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 CAND2O75155 1236 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 NDUFA10O95299 355 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 PDIA5Q14554 519 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 MCM6Q14566 821 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 MAP9Q49MG5 647 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 STRIP1Q5VSL9 837 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 ANKRD40Q6AI12 368 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 HHIPL2Q6UWX4 724 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 SRGAP1Q7Z6B7 1085 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 ADGRF4Q8IZF3 695 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 SLC39A2Q9NP94 309 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 DDX4Q9NQI0 724 aaKnown RBP10.72□□□□□ -0.69
COL6A3-204ENST00000392003 CAPN11Q9UMQ6 739 aa10.72□□□□□ -0.69
COL6A3-204ENST00000392003 DDX60LQ5H9U9 1706 aaKnown RBP10.71□□□□□ -0.69
COL6A3-204ENST00000392003 TDP2O95551 362 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 STK4Q13043 487 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 ARMC3Q5W041 872 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 CC2D2BQ6DHV5 1058 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 UNC13DQ70J99 1090 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 DYMQ7RTS9 669 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 DEFB132Q7Z7B7 95 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 PACS2Q86VP3 889 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 CLEC10AQ8IUN9 316 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 OGFOD1Q8N543 542 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 PSTPIP2Q9H939 334 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 JMJD4Q9H9V9 463 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 ARFGAP3Q9NP61 516 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 SNHG28P0DPA3 235 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 FCER1AP12319 257 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 GCFC2P16383 781 aaKnown RBP10.71□□□□□ -0.69
COL6A3-204ENST00000392003 IQCDQ96DY2 449 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 MTMR9Q96QG7 549 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 DUSP9Q99956 384 aaKnown RBP10.71□□□□□ -0.69
COL6A3-204ENST00000392003 HAUS4Q9H6D7 363 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 DDX25Q9UHL0 483 aaKnown RBP10.71□□□□□ -0.69
COL6A3-204ENST00000392003 PUF60Q9UHX1 559 aaKnown RBP10.71□□□□□ -0.69
COL6A3-204ENST00000392003 GUCA1BQ9UMX6 200 aa10.71□□□□□ -0.69
COL6A3-204ENST00000392003 IGKV6D-41A0A0C4DH26 115 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 FAM196BA6NMK8 535 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 ZBTB5O15062 677 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 ATP8B1O43520 1251 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 SSBP05455 408 aaKnown RBP eCLIP10.71□□□□□ -0.7
COL6A3-204ENST00000392003 NFIAQ12857 509 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 GRB10Q13322 594 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 UBE2SQ16763 222 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 RPAINQ86UA6 219 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 TTLL6Q8N841 843 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 EHBP1Q8NDI1 1231 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 ZNF507Q8TCN5 953 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 EEF2KMTQ96G04 330 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 CHP1Q99653 195 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 MMTAG2Q9BU76 263 aaKnown RBP10.71□□□□□ -0.7
COL6A3-204ENST00000392003 MED4Q9NPJ6 270 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 UBR3Q6ZT12 1888 aa10.71□□□□□ -0.7
COL6A3-204ENST00000392003 POLD1P28340 1107 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CYP2C19P33261 490 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 SLC16A2P36021 539 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 SSR1P43307 286 aaKnown RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 TTBK2Q6IQ55 1244 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CDK5RAP2Q96SN8 1893 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CTAGE15A4D2H0 777 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 RNF225M0QZC1 329 aaPredicted RBP10.7□□□□□ -0.7
COL6A3-204ENST00000392003 MAFGO15525 162 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 KRT86O43790 486 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 SLC37A4O43826 429 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 RAD17O75943 681 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 CTAGE8P0CG41 777 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 SHMT1P34896 483 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 ZBED6P86452 979 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 WHAMMP3Q1A5X7 153 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 PPP4R3AQ6IN85 833 aa10.7□□□□□ -0.7
COL6A3-204ENST00000392003 KCTD1Q719H9 257 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms