RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 AFF2P51816 1311 aa19.62■□□□□ 0.73
SQSTM1-202ENST00000389805 CCNT1O60563 726 aaKnown RBP19.62■□□□□ 0.73
SQSTM1-202ENST00000389805 BIN2Q9UBW5 565 aaPredicted RBP19.62■□□□□ 0.73
SQSTM1-202ENST00000389805 KRT14P02533 472 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 SH3GL2Q99962 352 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 DONSONQ9NYP3 566 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 KRT86O43790 486 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 AGPAT5Q9NUQ2 364 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 TMEM260Q9NX78 707 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 RWDD2AQ9UIY3 292 aa19.61■□□□□ 0.73
SQSTM1-202ENST00000389805 THSD7AQ9UPZ6 1657 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 CCDC178Q5BJE1 867 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 LRRC47Q8N1G4 583 aaKnown RBP19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 ZMYND12Q9H0C1 365 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 DAGLAQ9Y4D2 1042 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 GUCY1A3Q02108 690 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 APBA1Q02410 837 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 TXNRD1Q16881 649 aa19.6■□□□□ 0.73
SQSTM1-202ENST00000389805 LRRC10BA6NIK2 292 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 GOLGA8KD6RF30 607 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 BBOX1O75936 387 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 TRIM37O94972 964 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 FNTAP49354 379 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 KLK7P49862 253 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 CCDC70Q6NSX1 233 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 ZNF287Q9HBT7 754 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 SCP2P22307 547 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 TRIM14Q14142 442 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 IRF2BP1Q8IU81 584 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 DAGLBQ8NCG7 672 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 COA7Q96BR5 231 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 RPGRIP1Q96KN7 1286 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 LY75O60449 1722 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 ECM2O94769 699 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 ADRA2BP18089 450 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 TECP42680 631 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 SEC24CP53992 1094 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 ACTN3Q08043 901 aaPredicted RBP19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 KRT26Q7Z3Y9 468 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 GIMAP7Q8NHV1 300 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 SPZ1Q9BXG8 430 aa19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 DDX4Q9NQI0 724 aaKnown RBP19.59■□□□□ 0.73
SQSTM1-202ENST00000389805 SCNN1DP51172 638 aa19.58■□□□□ 0.73
SQSTM1-202ENST00000389805 DOK7Q18PE1 504 aa19.58■□□□□ 0.73
SQSTM1-202ENST00000389805 NAV1Q8NEY1 1877 aa19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 POLRMTO00411 1230 aaKnown RBP19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 MEFVO15553 781 aaPredicted RBP19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 KLRC4O43908 158 aa19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 OPA1O60313 960 aa19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 PLCG1P19174 1290 aa19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 CERS5Q8N5B7 392 aa19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 TBCKQ8TEA7 893 aa19.58■□□□□ 0.72
SQSTM1-202ENST00000389805 HSF2BPO75031 334 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 AKR1B1P15121 316 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 B4GALNT4Q76KP1 1039 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 MB21D1Q8N884 522 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 PCMTD1Q96MG8 357 aaPredicted RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 PYM1Q9BRP8 204 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 DDX60LQ5H9U9 1706 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 IPO7O95373 1038 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 KRT83P78385 493 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 SPAG1Q07617 926 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 NNTQ13423 1086 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 NONOQ15233 471 aaKnown RBP eCLIP19.57■□□□□ 0.722e-8■■■■□ 21.7
SQSTM1-202ENST00000389805 ADSSL1Q8N142 457 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 HPS3Q969F9 1004 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 FAM163AQ96GL9 167 aaPredicted RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 RNPC3Q96LT9 517 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 ZIM3Q96PE6 472 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 GPCPD1Q9NPB8 672 aa19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 SEC63Q9UGP8 760 aaKnown RBP19.57■□□□□ 0.72
SQSTM1-202ENST00000389805 SSBP05455 408 aaKnown RBP eCLIP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 PLCG2P16885 1265 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 RDXP35241 583 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 CREG2Q8IUH2 290 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 ZKSCAN4Q969J2 545 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 NHEJ1Q9H9Q4 299 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 KBTBD4Q9NVX7 518 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 RMND1Q9NWS8 449 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 GAKO14976 1311 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 SPATA31A6Q5VVP1 1343 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 PDHBP11177 359 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 TRIM21P19474 475 aaKnown RBP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 GALNT17Q6IS24 598 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 DPP8Q6V1X1 898 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 CABP7Q86V35 215 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 LZTS2Q9BRK4 669 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 MLXIPQ9HAP2 919 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 C6orf50Q9HD87 102 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 LRWD1Q9UFC0 647 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 OR52Z1P0C646 297 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 HOXA10P31260 410 aaPredicted RBP19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 IFT88Q13099 833 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 CCDC96Q2M329 555 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 SOGA3Q5TF21 947 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 NFRKBQ6P4R8 1299 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 CCSER1Q9C0I3 900 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 CAPN6Q9Y6Q1 641 aa19.56■□□□□ 0.72
SQSTM1-202ENST00000389805 CDK5RAP2Q96SN8 1893 aa19.55■□□□□ 0.72
SQSTM1-202ENST00000389805 ESYT3A0FGR9 886 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms