RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 CNNM4Q6P4Q7 775 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 C2CD5Q86YS7 1000 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 CCDC155Q8N6L0 562 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 NOC4LQ9BVI4 516 aaKnown RBP14.93□□□□□ -0.02
CCDC3-202ENST00000378839 STK17AQ9UEE5 414 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 DUSP10Q9Y6W6 482 aa14.93□□□□□ -0.02
CCDC3-202ENST00000378839 MEIS2O14770 477 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 ZNF263O14978 683 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 PLSCR1O15162 318 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 AMPD3Q01432 767 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 AMPD2Q01433 879 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 CERKLQ49MI3 558 aaPredicted RBP14.92□□□□□ -0.02
CCDC3-202ENST00000378839 LRRC55Q6ZSA7 311 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 NOC3LQ8WTT2 800 aaKnown RBP14.92□□□□□ -0.02
CCDC3-202ENST00000378839 LACRTQ9GZZ8 138 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 CDC23Q9UJX2 597 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 BICDL2A1A5D9 508 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 E9PMD0 336 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 MTIF2P46199 727 aaKnown RBP14.92□□□□□ -0.02
CCDC3-202ENST00000378839 RBM5P52756 815 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC3-202ENST00000378839 CACNB1Q02641 598 aaPredicted RBP14.92□□□□□ -0.02
CCDC3-202ENST00000378839 SLFN13Q68D06 897 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 ZBTB9Q96C00 473 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 IDI2Q9BXS1 227 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 ANKZF1Q9H8Y5 726 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 HDAC6Q9UBN7 1215 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 SIK3Q9Y2K2 1263 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 PCDHA1Q9Y5I3 950 aa14.92□□□□□ -0.02
CCDC3-202ENST00000378839 PVALEFA0A1B0GWK0 134 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 IDEP14735 1019 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 CDC37Q16543 378 aaPredicted RBP14.91□□□□□ -0.02
CCDC3-202ENST00000378839 AOC3Q16853 763 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 CRYGNQ8WXF5 182 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 GUCA1BQ9UMX6 200 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 SLC1A4P43007 532 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 TMEM266Q2M3C6 531 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 STRIP1Q5VSL9 837 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 KRT79Q5XKE5 535 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 SRGAP1Q7Z6B7 1085 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 KRT222Q8N1A0 295 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 TDRD3Q9H7E2 651 aaKnown RBP14.91□□□□□ -0.02
CCDC3-202ENST00000378839 ENC1O14682 589 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 TBC1D8O95759 1140 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 MRPL12P52815 198 aaKnown RBP14.91□□□□□ -0.02
CCDC3-202ENST00000378839 KIF4BQ2VIQ3 1234 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 CC2D1AQ6P1N0 951 aaPredicted RBP14.91□□□□□ -0.02
CCDC3-202ENST00000378839 C7orf43Q8WVR3 580 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 ERGIC2Q96RQ1 377 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 PNKPQ96T60 521 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 KCNMB3Q9NPA1 279 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 TBC1D7Q9P0N9 293 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 PI4KBQ9UBF8 816 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 PCDHA2Q9Y5H9 948 aa14.91□□□□□ -0.02
CCDC3-202ENST00000378839 UTRNP46939 3433 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 A0A1W2PRG0 241 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 CTAGE9A4FU28 777 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 YDJCA8MPS7 323 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 OPLAHO14841 1288 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 CYP27A1Q02318 531 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 GPR161Q8N6U8 529 aaKnown RBP14.9□□□□□ -0.02
CCDC3-202ENST00000378839 CDK5RAP3Q96JB5 506 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 CCDC17Q96LX7 622 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 NHEJ1Q9H9Q4 299 aaPredicted RBP14.9□□□□□ -0.02
CCDC3-202ENST00000378839 NYAP2Q9P242 653 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 PCDHA12Q9UN75 941 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 POTEB3A0JP26 581 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 POTECB2RU33 542 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 TRIM21P19474 475 aaKnown RBP14.9□□□□□ -0.02
CCDC3-202ENST00000378839 CHMP4BP1P59074 171 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 COASYQ13057 564 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 KIAA1755Q5JYT7 1200 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 POTEBQ6S5H4 581 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 RABGGTAQ92696 567 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 PRMT6Q96LA8 375 aaPredicted RBP14.9□□□□□ -0.02
CCDC3-202ENST00000378839 BCAS3Q9H6U6 928 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 SMCHD1A6NHR9 2005 aa14.9□□□□□ -0.02
CCDC3-202ENST00000378839 F5H6K3 240 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 MED24O75448 989 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 KLRC3Q07444 240 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 SPIRE1Q08AE8 756 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 RAD51AP2Q09MP3 1159 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 VWA3BQ502W6 1294 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 ZCWPW2Q504Y3 356 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 ARSHQ5FYA8 562 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 NCAPH2Q6IBW4 605 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 KRT26Q7Z3Y9 468 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 GUF1Q8N442 669 aaKnown RBP14.89□□□□□ -0.03
CCDC3-202ENST00000378839 GOLGA1Q92805 767 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 KIAA1024Q9UPX6 916 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 TNS1Q9HBL0 1735 aaKnown RBP14.89□□□□□ -0.03
CCDC3-202ENST00000378839 HYIQ5T013 277 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 LENG9Q96B70 501 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 NAPGQ99747 312 aaPredicted RBP14.89□□□□□ -0.03
CCDC3-202ENST00000378839 MRIQ9BWK5 157 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 ANO3Q9BYT9 981 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 NDST4Q9H3R1 872 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 KANSL2Q9H9L4 492 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 NDUFB10O96000 172 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 PSMC6P62333 389 aa14.89□□□□□ -0.03
CCDC3-202ENST00000378839 ZBED6P86452 979 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms