RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 FCHSD1Q86WN1 690 aa19.41■□□□□ 0.7
HMGN4-201ENST00000377575 CMTR1Q8N1G2 835 aaKnown RBP19.41■□□□□ 0.7
HMGN4-201ENST00000377575 SLC43A3Q8NBI5 491 aa19.41■□□□□ 0.7
HMGN4-201ENST00000377575 COPS5Q92905 334 aa19.41■□□□□ 0.7
HMGN4-201ENST00000377575 JAKMIP1Q96N16 626 aaKnown RBP19.41■□□□□ 0.7
HMGN4-201ENST00000377575 MTG1Q9BT17 334 aaPredicted RBP19.41■□□□□ 0.7
HMGN4-201ENST00000377575 TBX21Q9UL17 535 aa19.41■□□□□ 0.7
HMGN4-201ENST00000377575 MRVI1Q9Y6F6 885 aa19.41■□□□□ 0.7
HMGN4-201ENST00000377575 SZT2Q5T011 3432 aa19.41■□□□□ 0.7
HMGN4-201ENST00000377575 A6NJR5 290 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 RCAN1P53805 252 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 RTN1Q16799 776 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 LY6KQ17RY6 165 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 KCNV1Q6PIU1 500 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 BLOC1S2Q6QNY1 142 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 SMARCC2Q8TAQ2 1214 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 SNX14Q9Y5W7 946 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 FRMPD4Q14CM0 1322 aa19.4■□□□□ 0.7
HMGN4-201ENST00000377575 KLF18A0A0U1RQI7 1052 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 GOLGA8AA7E2F4 631 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 GOLGA8BA8MQT2 603 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 PIK3CDO00329 1044 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 TIMP1P01033 207 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 ITGB8P26012 769 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 PSMA5P28066 241 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 PSMC6P62333 389 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 VSIG10LQ86VR7 867 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 CCDC82Q8N4S0 544 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 CNTNAP5Q8WYK1 1306 aa19.39■□□□□ 0.69
HMGN4-201ENST00000377575 SOX1O00570 391 aaPredicted RBP19.38■□□□□ 0.69
HMGN4-201ENST00000377575 GRIN2DO15399 1336 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 STAM2O75886 525 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 CD4P01730 458 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 FPGSQ05932 587 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 ARHGAP1Q07960 439 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 IL31RAQ8NI17 732 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 EMID1Q96A84 441 aaPredicted RBP19.38■□□□□ 0.69
HMGN4-201ENST00000377575 DDX41Q9UJV9 622 aaKnown RBP19.38■□□□□ 0.69
HMGN4-201ENST00000377575 BRPF3Q9ULD4 1205 aa19.38■□□□□ 0.69
HMGN4-201ENST00000377575 NAP1L2Q9ULW6 460 aaPredicted RBP19.38■□□□□ 0.69
HMGN4-201ENST00000377575 MMP3P08254 477 aa19.37■□□□□ 0.69
HMGN4-201ENST00000377575 GNPTABQ3T906 1256 aa19.37■□□□□ 0.69
HMGN4-201ENST00000377575 Q6ZUG5 572 aa19.37■□□□□ 0.69
HMGN4-201ENST00000377575 HEATR3Q7Z4Q2 680 aa19.37■□□□□ 0.69
HMGN4-201ENST00000377575 AFG1LQ8WV93 481 aa19.37■□□□□ 0.69
HMGN4-201ENST00000377575 CCDC196A0A1B0GTZ2 297 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 B4GALT4O60513 344 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 TGFB3P10600 412 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 CPA1P15085 419 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 CASTP20810 708 aaKnown RBP19.36■□□□□ 0.69
HMGN4-201ENST00000377575 RPS6KB1P23443 525 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 METAP2P50579 478 aaKnown RBP eCLIP19.36■□□□□ 0.69
HMGN4-201ENST00000377575 LAMC2Q13753 1193 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 DGKDQ16760 1214 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 MFSD5Q6N075 450 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 GPR153Q6NV75 609 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 NFRKBQ6P4R8 1299 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 USP17L6PQ6QN14 398 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 LRCH3Q96II8 777 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 ALDH8A1Q9H2A2 487 aaPredicted RBP19.36■□□□□ 0.69
HMGN4-201ENST00000377575 PSTPIP2Q9H939 334 aa19.36■□□□□ 0.69
HMGN4-201ENST00000377575 DOCK5Q9H7D0 1870 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 NID2Q14112 1375 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 hCG_1642624A0A1W2PR95 340 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 hCG_1984214I3L0E3 225 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 MEIS2O14770 477 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 RGS20O76081 388 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 SUPT20HL2P0C7V6 817 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 PPIGQ13427 754 aaKnown RBP eCLIP19.35■□□□□ 0.69
HMGN4-201ENST00000377575 FAM47CQ5HY64 1035 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 PPP1R18Q6NYC8 613 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 XRRA1Q6P2D8 792 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 DHX37Q8IY37 1157 aaKnown RBP19.35■□□□□ 0.69
HMGN4-201ENST00000377575 FBXL16Q8N461 479 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 TMEM199Q8N511 208 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 ZNF713Q8N859 430 aaPredicted RBP19.35■□□□□ 0.69
HMGN4-201ENST00000377575 PPTC7Q8NI37 304 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 BRF1Q92994 677 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 PPP1R12CQ9BZL4 782 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 HIPK3Q9H422 1215 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 TANC1Q9C0D5 1861 aa19.35■□□□□ 0.69
HMGN4-201ENST00000377575 UBA1P22314 1058 aaKnown RBP19.34■□□□□ 0.69
HMGN4-201ENST00000377575 PTPN11Q06124 597 aaPredicted RBP19.34■□□□□ 0.69
HMGN4-201ENST00000377575 APOBRQ0VD83 1088 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 SHHQ15465 462 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 NBPF20Q3BBV1 942 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 PCNX4Q63HM2 1172 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 TEX2Q8IWB9 1127 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 GPKOWQ92917 476 aaPredicted RBP eCLIP19.34■□□□□ 0.69
HMGN4-201ENST00000377575 KATNAL1Q9BW62 490 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 TRPV6Q9H1D0 765 aa19.34■□□□□ 0.69
HMGN4-201ENST00000377575 SPDYE3A6NKU9 549 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 GGPS1O95749 300 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 NAPAP54920 295 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 FUT2Q10981 343 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 C9orf50Q5SZB4 431 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 CELF3Q5SZQ8 465 aaKnown RBP19.33■□□□□ 0.68
HMGN4-201ENST00000377575 WWC2Q6AWC2 1192 aa19.33■□□□□ 0.68
HMGN4-201ENST00000377575 INPP4AQ96PE3 977 aaPredicted RBP19.33■□□□□ 0.68
HMGN4-201ENST00000377575 USP26Q9BXU7 913 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms