RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 VPS54Q9P1Q0 977 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 RBM27Q9P2N5 1060 aaKnown RBP15.35■□□□□ 0.05
VPS28-202ENST00000377348 PDE4DIPQ5VU43 2346 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 FRMPD4Q14CM0 1322 aa15.35■□□□□ 0.05
VPS28-202ENST00000377348 EIF3JO75822 258 aaKnown RBP15.34■□□□□ 0.05
VPS28-202ENST00000377348 RGS20O76081 388 aa15.34■□□□□ 0.05
VPS28-202ENST00000377348 TXNP10599 105 aaKnown RBP15.34■□□□□ 0.05
VPS28-202ENST00000377348 CCND2P30279 289 aa15.34■□□□□ 0.05
VPS28-202ENST00000377348 MRPS9P82933 396 aaKnown RBP15.34■□□□□ 0.05
VPS28-202ENST00000377348 KLHDC9Q8NEP7 349 aa15.34■□□□□ 0.05
VPS28-202ENST00000377348 GTF3C6Q969F1 213 aa15.34■□□□□ 0.05
VPS28-202ENST00000377348 PCDHA6Q9UN73 950 aa15.34■□□□□ 0.05
VPS28-202ENST00000377348 PCDHA8Q9Y5H6 950 aa15.34■□□□□ 0.05
VPS28-202ENST00000377348 SPDYE3A6NKU9 549 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 DEXIO95424 95 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 ATN1P54259 1190 aaPredicted RBP15.33■□□□□ 0.04
VPS28-202ENST00000377348 TTLL4Q14679 1199 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 RABEP1Q15276 862 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 KCNA10Q16322 511 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 LY6KQ17RY6 165 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 CCSAPQ6IQ19 270 aaPredicted RBP15.33■□□□□ 0.04
VPS28-202ENST00000377348 CCDC62Q6P9F0 684 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 ZMYND12Q9H0C1 365 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 SPC25Q9HBM1 224 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 RTEL1Q9NZ71 1219 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 LIMCH1Q9UPQ0 1083 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 PHF24Q9UPV7 400 aa15.33■□□□□ 0.04
VPS28-202ENST00000377348 SORBS3O60504 671 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 CDKL5O76039 1030 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 CST5P28325 142 aaPredicted RBP15.32■□□□□ 0.04
VPS28-202ENST00000377348 CLK2P49760 499 aaKnown RBP15.32■□□□□ 0.04
VPS28-202ENST00000377348 FSCN1Q16658 493 aaKnown RBP15.32■□□□□ 0.04
VPS28-202ENST00000377348 LRRC26Q2I0M4 334 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 GNASQ5JWF2 1037 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 JAKMIP3Q5VZ66 844 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 OR6J1Q8NGC5 347 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 RASGRP4Q8TDF6 673 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 CCDC12Q8WUD4 166 aaPredicted RBP15.32■□□□□ 0.04
VPS28-202ENST00000377348 DPF3Q92784 378 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 HTATIP2Q9BUP3 242 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 ANO3Q9BYT9 981 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 AP5M1Q9H0R1 490 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 C6orf50Q9HD87 102 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 DDX41Q9UJV9 622 aaKnown RBP15.32■□□□□ 0.04
VPS28-202ENST00000377348 MRVI1Q9Y6F6 885 aa15.32■□□□□ 0.04
VPS28-202ENST00000377348 A0A1W2PQ45 241 aaPredicted RBP15.31■□□□□ 0.04
VPS28-202ENST00000377348 A0A1W2PQY0 241 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 ESYT2A0FGR8 921 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 JAK2O60674 1132 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 CD2BP2O95400 341 aaKnown RBP15.31■□□□□ 0.04
VPS28-202ENST00000377348 ASGR1P07306 291 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 FDPSP14324 419 aaKnown RBP15.31■□□□□ 0.04
VPS28-202ENST00000377348 PCNX4Q63HM2 1172 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 CCDC83Q8IWF9 413 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 NSUN7Q8NE18 718 aaKnown RBP15.31■□□□□ 0.04
VPS28-202ENST00000377348 CCDC148Q8NFR7 591 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 TSEN34Q9BSV6 310 aaKnown RBP15.31■□□□□ 0.04
VPS28-202ENST00000377348 GJB4Q9NTQ9 266 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 ORC3Q9UBD5 711 aaPredicted RBP15.31■□□□□ 0.04
VPS28-202ENST00000377348 Q9Y3F1 56 aa15.31■□□□□ 0.04
VPS28-202ENST00000377348 NKRFO15226 690 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS28-202ENST00000377348 ACLYP53396 1101 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 NKX3-2P78367 333 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 SP2Q02086 613 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 ARHGAP1Q07960 439 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 SEMA3FQ13275 785 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 KIAA1217Q5T5P2 1943 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 INPP4AQ96PE3 977 aaPredicted RBP15.3■□□□□ 0.04
VPS28-202ENST00000377348 GLT8D2Q9H1C3 349 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 SH3GLB2Q9NR46 395 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 STK36Q9NRP7 1315 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 PCDH10Q9P2E7 1040 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 KCNJ14Q9UNX9 436 aa15.3■□□□□ 0.04
VPS28-202ENST00000377348 CEP290O15078 2479 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 ALPK3Q96L96 1907 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 MOXD2PA6NHM9 499 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 FOSP01100 380 aaPredicted RBP15.29■□□□□ 0.04
VPS28-202ENST00000377348 GH1P01241 217 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 UBA1P22314 1058 aaKnown RBP15.29■□□□□ 0.04
VPS28-202ENST00000377348 GNA11P29992 359 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 NLRP5P59047 1200 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 AP3B2Q13367 1082 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 GNPTABQ3T906 1256 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 CXCL17Q6UXB2 119 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 SLC39A5Q6ZMH5 540 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 REXO1Q8N1G1 1221 aaKnown RBP15.29■□□□□ 0.04
VPS28-202ENST00000377348 PCSK9Q8NBP7 692 aaKnown RBP15.29■□□□□ 0.04
VPS28-202ENST00000377348 BCAS3Q9H6U6 928 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 EHMT1Q9H9B1 1298 aa15.29■□□□□ 0.04
VPS28-202ENST00000377348 SPATA31C2B4DYI2 1134 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 ST18O60284 1047 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 EVI5O60447 810 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 STAM2O75886 525 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 MYL3P08590 195 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 ITGB5P18084 799 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 SREBF1P36956 1147 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 FOSBP53539 338 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 XRRA1Q6P2D8 792 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 TEX2Q8IWB9 1127 aa15.28■□□□□ 0.04
VPS28-202ENST00000377348 C7orf61Q8IZ16 206 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms