RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CDC37L1Q7L3B6 337 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 C17orf53Q8N3J3 647 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 EPN1Q9Y6I3 576 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 WDR64B1ANS9 1081 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MEIS1O00470 390 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 SLC27A2O14975 620 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 HSPD1P10809 573 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 RAB14P61106 215 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 ETF1P62495 437 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 CYTH2Q99418 400 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MTRQ99707 1265 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 NFKBIL1Q9UBC1 381 aaPredicted RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 NSFL1CQ9UNZ2 370 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 CFLARO15519 480 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 MED7O43513 233 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 KSR1Q8IVT5 923 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 TCP11X2Q5H9J9 407 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 DEPDC1Q5TB30 811 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 EHHADHQ08426 723 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 ANO5Q75V66 913 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 RETREG2Q8NC44 543 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 APOBEC2Q9Y235 224 aaKnown RBP12.56□□□□□ -0.4
VPS13A-205ENST00000376636 SUGT1Q9Y2Z0 365 aa12.56□□□□□ -0.4
VPS13A-205ENST00000376636 NBNO60934 754 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 POLD1P28340 1107 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 CEP85Q6P2H3 762 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 WDR75Q8IWA0 830 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 KCTD6Q8NC69 237 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 MFAP3P55082 362 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 GALNT17Q6IS24 598 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 MRPL47Q9HD33 250 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 MAGEA9P43362 315 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 EXOC3L4Q17RC7 722 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 SZRD1Q7Z422 152 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 DESI2Q9BSY9 194 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 FIS1Q9Y3D6 152 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 GON4LQ3T8J9 2241 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 TLR3O15455 904 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 ESRRBO95718 433 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 ADAT2Q7Z6V5 191 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 BICC1Q9H694 974 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 SAP30BPQ9UHR5 308 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 CCDC151A5D8V7 595 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 DLATP10515 647 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 FBXO2Q9UK22 296 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 RBM6P78332 1123 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 DNAJC17Q9NVM6 304 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 PHF8Q9UPP1 1060 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 RTCBQ9Y3I0 505 aaKnown RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 H2AFZP0C0S5 128 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 ARHGEF16Q5VV41 709 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 H2AFVQ71UI9 128 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 PLEKHM2Q8IWE5 1019 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 ZNF215Q9UL58 517 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 MAP3K1Q13233 1512 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 ARHGEF37A1IGU5 675 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 LZTS3O60299 673 aaPredicted RBP12.55□□□□□ -0.4
VPS13A-205ENST00000376636 C4BPBP20851 252 aa12.55□□□□□ -0.4
VPS13A-205ENST00000376636 KRT7P08729 469 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 ARL4AP40617 200 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 KIF22Q14807 665 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 CENPUQ71F23 418 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 DZIP3Q86Y13 1208 aaKnown RBP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 COL4A3BPQ9Y5P4 624 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 TRAF7Q6Q0C0 670 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 TAGAPQ8N103 731 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 NDUFAF2Q8N183 169 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 KRT37O76014 449 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 RSRC2Q7L4I2 434 aaKnown RBP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 SYT2Q8N9I0 419 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 CALR3Q96L12 384 aaKnown RBP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 CDC23Q9UJX2 597 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 SBNO1A3KN83 1393 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 AARSP49588 968 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 DEFA1P59665 94 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 DEFA3P59666 94 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 MYL7Q01449 175 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 C1orf146Q5VVC0 180 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 NEK9Q8TD19 979 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 SPARCL1Q14515 664 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 RYBPQ8N488 228 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 TTLL11Q8NHH1 800 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 GDAP1Q8TB36 358 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 TSC22D4Q9Y3Q8 395 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 IRS4O14654 1257 aaPredicted RBP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 SOX5P35711 763 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 CDC26Q8NHZ8 85 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 CCDC90BQ9GZT6 254 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 SLC38A10Q9HBR0 1119 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 MAPK4P31152 587 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 STAMBPL1Q96FJ0 436 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 GUCY1A3Q02108 690 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 NR5A1Q13285 461 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 ZMYND12Q9H0C1 365 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.54□□□□□ -0.4
VPS13A-205ENST00000376636 HSPA4LO95757 839 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 EPB41L5Q9HCM4 733 aa12.54□□□□□ -0.4
VPS13A-205ENST00000376636 PLS3P13797 630 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 PSMA3P25788 255 aa12.53□□□□□ -0.4
VPS13A-205ENST00000376636 HIBCHQ6NVY1 386 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms