RNA–Protein interactions for RNA: ENST00000375290.6

PTCH1-204, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 10,631 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-204ENST00000375290 DBNDD2Q9BQY9 259 aa11.05□□□□□ -0.64
PTCH1-204ENST00000375290 DONSONQ9NYP3 566 aa11.05□□□□□ -0.64
PTCH1-204ENST00000375290 PCDHA12Q9UN75 941 aa11.05□□□□□ -0.64
PTCH1-204ENST00000375290 STAM2O75886 525 aa11.05□□□□□ -0.64
PTCH1-204ENST00000375290 PSMC2P35998 433 aaKnown RBP11.05□□□□□ -0.64
PTCH1-204ENST00000375290 DHX9Q08211 1270 aaKnown RBP11.05□□□□□ -0.64
PTCH1-204ENST00000375290 TCP11X2Q5H9J9 407 aa11.05□□□□□ -0.64
PTCH1-204ENST00000375290 ZNF526Q8TF50 670 aaPredicted RBP11.05□□□□□ -0.64
PTCH1-204ENST00000375290 MTRQ99707 1265 aa11.05□□□□□ -0.64
PTCH1-204ENST00000375290 TAF1DQ9H5J8 278 aaPredicted RBP11.05□□□□□ -0.64
PTCH1-204ENST00000375290 NECTIN1Q15223 517 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 WDR75Q8IWA0 830 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 TRIM31Q9BZY9 425 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 CDR2Q01850 454 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 KIF23Q02241 960 aaPredicted RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 KRT80Q6KB66 452 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 KIF9Q9HAQ2 790 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 NCOA5Q9HCD5 579 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 MSH2P43246 934 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 HDAC4P56524 1084 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 STX1BP61266 288 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 PHEXP78562 749 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 ASPRV1Q53RT3 343 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 OTUD7AQ8TE49 926 aaPredicted RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 TPX2Q9ULW0 747 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 SRRM3A6NNA2 597 aaPredicted RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 RESTQ13127 1097 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 RPS6KA2Q15349 733 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 MYCT1Q8N699 235 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 PANK4Q9NVE7 773 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 IL1RAPL1Q9NZN1 696 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 PRPF3O43395 683 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 CACYBPQ9HB71 228 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 PCDHA4Q9UN74 947 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 RNF17Q9BXT8 1623 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 KRT38O76015 456 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 RWDD2BP57060 319 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 PLA2R1Q13018 1463 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 ADRM1Q16186 407 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 PRPF31Q8WWY3 499 aaKnown RBP11.04□□□□□ -0.64
PTCH1-204ENST00000375290 AK9Q5TCS8 1911 aa11.04□□□□□ -0.64
PTCH1-204ENST00000375290 CYP2E1P05181 493 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 TXKP42681 527 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 HSPA13P48723 471 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 APOA5Q6Q788 366 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 PDIK1LQ8N165 341 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 SGSM3Q96HU1 749 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 VGLL3A8MV65 326 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 C6orf229H3BNL8 230 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 PPP1R18Q6NYC8 613 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 RMDN2Q96LZ7 410 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 ZNF532Q9HCE3 1301 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 ATF7P17544 494 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 EIF3HO15372 352 aaKnown RBP eCLIP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 EIF4A1P60842 406 aaKnown RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 NOP14P78316 857 aaKnown RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 WDR93Q6P2C0 686 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 CHST3Q7LGC8 479 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 HACD3Q9P035 362 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 ESRRBO95718 433 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 EHHADHQ08426 723 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 LONRF3Q496Y0 759 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 IFNL3Q8IZI9 196 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 TTC39CQ8N584 583 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 KLHDC4Q8TBB5 520 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 THOC1Q96FV9 657 aaKnown RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 ARHGAP26Q9UNA1 814 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 ESRRAP11474 423 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 ZFXP17010 805 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 RFC4P35249 363 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 BFSP1Q12934 665 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 PTGDRQ13258 359 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 TERB1Q8NA31 727 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 AGTP01019 485 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 SCP2P22307 547 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 USP14P54578 494 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 U2AF1L4Q8WU68 220 aaKnown RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 PHF23Q9BUL5 403 aaPredicted RBP11.03□□□□□ -0.64
PTCH1-204ENST00000375290 AGBL2Q5U5Z8 902 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 PITPNM3Q9BZ71 974 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 L2HGDHQ9H9P8 463 aa11.03□□□□□ -0.64
PTCH1-204ENST00000375290 KRT16P08779 473 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 SLC30A9Q6PML9 568 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 RBM41Q96IZ5 413 aaKnown RBP11.02□□□□□ -0.64
PTCH1-204ENST00000375290 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.02□□□□□ -0.64
PTCH1-204ENST00000375290 FAM8A1Q9UBU6 413 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 SERPINB2P05120 415 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 SLC1A4P43007 532 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 SURF1Q15526 300 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 C11orf57Q6ZUT1 292 aaPredicted RBP11.02□□□□□ -0.64
PTCH1-204ENST00000375290 ANO5Q75V66 913 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 AGGF1Q8N302 714 aaeCLIP11.02□□□□□ -0.64
PTCH1-204ENST00000375290 UBN2Q6ZU65 1347 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 HNRNPRO43390 633 aaKnown RBP11.02□□□□□ -0.64
PTCH1-204ENST00000375290 OCA2Q04671 838 aa11.02□□□□□ -0.64
PTCH1-204ENST00000375290 KPNB1Q14974 876 aaKnown RBP11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms