RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 SNHG28P0DPA3 235 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 CAPN2P17655 700 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 BMP6P22004 513 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 MCM7P33993 719 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 NAPAP54920 295 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 UBASH3AP57075 661 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 SLC35G1Q2M3R5 365 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 SH3D19Q5HYK7 790 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 ISM2Q6H9L7 571 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 PPP1R18Q6NYC8 613 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 USP49Q70CQ1 688 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 FILIP1Q7Z7B0 1213 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 C4orf32Q8N8J7 132 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 CCDC17Q96LX7 622 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 TRIM34Q9BYJ4 488 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 RIOX1Q9H6W3 641 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 UQCRHLA0A096LP55 91 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 EVI5O60447 810 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 MYL1P05976 194 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 UQCRHP07919 91 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 SFPQP23246 707 aaKnown RBP eCLIP15.87■□□□□ 0.13
LDB3-204ENST00000372066 CCZ1BP86790 482 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 CCZ1P86791 482 aaPredicted RBP15.87■□□□□ 0.13
LDB3-204ENST00000372066 DPYDQ12882 1025 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 E2F4Q16254 413 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 TMC6Q7Z403 805 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 CCDC112Q8NEF3 446 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 MYRIPQ8NFW9 859 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 WDR18Q9BV38 432 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 MAGEF1Q9HAY2 307 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 PAK6Q9NQU5 681 aaPredicted RBP15.87■□□□□ 0.13
LDB3-204ENST00000372066 RMND1Q9NWS8 449 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 TMOD4Q9NZQ9 345 aa15.87■□□□□ 0.13
LDB3-204ENST00000372066 COL2A1P02458 1487 aaPredicted RBP15.86■□□□□ 0.13
LDB3-204ENST00000372066 CEP290O15078 2479 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 A0A087X0B3 334 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 GTPBP6O43824 516 aaPredicted RBP15.86■□□□□ 0.13
LDB3-204ENST00000372066 TTLL1O95922 423 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 ASNSP08243 561 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 PDHBP11177 359 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 SKILP12757 684 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 BACE1P56817 501 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 IRX3P78415 501 aaPredicted RBP15.86■□□□□ 0.13
LDB3-204ENST00000372066 MTMR2Q13614 643 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 NONOQ15233 471 aaKnown RBP eCLIP15.86■□□□□ 0.13
LDB3-204ENST00000372066 TYW1BQ6NUM6 668 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 DTHD1Q6ZMT9 781 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 C17orf53Q8N3J3 647 aaPredicted RBP15.86■□□□□ 0.13
LDB3-204ENST00000372066 AK8Q96MA6 479 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 CCSER1Q9C0I3 900 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 CUEDC2Q9H467 287 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 GJD2Q9UKL4 321 aa15.86■□□□□ 0.13
LDB3-204ENST00000372066 KIF2AO00139 706 aaPredicted RBP15.85■□□□□ 0.13
LDB3-204ENST00000372066 ZNF18P17022 549 aa15.85■□□□□ 0.13
LDB3-204ENST00000372066 GTF2F1P35269 517 aaKnown RBP eCLIP15.85■□□□□ 0.13
LDB3-204ENST00000372066 PDXDC2PQ6P474 469 aa15.85■□□□□ 0.13
LDB3-204ENST00000372066 PAWRQ96IZ0 340 aaKnown RBP15.85■□□□□ 0.13
LDB3-204ENST00000372066 P2RX7Q99572 595 aaKnown RBP15.85■□□□□ 0.13
LDB3-204ENST00000372066 CRISPLD2Q9H0B8 497 aa15.85■□□□□ 0.13
LDB3-204ENST00000372066 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.85■□□□□ 0.13
LDB3-204ENST00000372066 FANCLQ9NW38 375 aa15.85■□□□□ 0.13
LDB3-204ENST00000372066 NFE2L3Q9Y4A8 694 aa15.85■□□□□ 0.13
LDB3-204ENST00000372066 CCP110O43303 1012 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 HMGCRP04035 888 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 JAG1P78504 1218 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 GPATCH4Q5T3I0 446 aaKnown RBP15.84■□□□□ 0.13
LDB3-204ENST00000372066 USP17L2Q6R6M4 530 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 VSTM4Q8IW00 320 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 GTPBP4Q9BZE4 634 aaKnown RBP15.84■□□□□ 0.13
LDB3-204ENST00000372066 SYNRGQ9UMZ2 1314 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 TRIOBPQ9H2D6 2365 aa15.84■□□□□ 0.13
LDB3-204ENST00000372066 SMCO2A6NFE2 343 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 C19orf81C9J6K1 198 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 GDF11O95390 407 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 TUBB4AP04350 444 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 GOLGA8HP0CJ92 632 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 ATP1A3P13637 1013 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 AKR1B1P15121 316 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 HOXA7P31268 230 aaPredicted RBP15.83■□□□□ 0.13
LDB3-204ENST00000372066 SPATA1Q5VX52 437 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 NECAB2Q7Z6G3 386 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 NEK8Q86SG6 692 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 GRAMD1CQ8IYS0 662 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 DNAJC18Q9H819 358 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 HMX1Q9NP08 348 aaPredicted RBP15.83■□□□□ 0.13
LDB3-204ENST00000372066 MORF4L1Q9UBU8 362 aa15.83■□□□□ 0.13
LDB3-204ENST00000372066 USP17L10C9JJH3 530 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 OR52Z1P0C646 297 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 SHMT1P34896 483 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 AFMP43652 599 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 TRIM32Q13049 653 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 DOCK1Q14185 1865 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 IL17AQ16552 155 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 INF2Q27J81 1249 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 SHROOM1Q2M3G4 852 aaPredicted RBP15.83■□□□□ 0.12
LDB3-204ENST00000372066 REXO1Q8N1G1 1221 aaKnown RBP15.83■□□□□ 0.12
LDB3-204ENST00000372066 GPRC5AQ8NFJ5 357 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 PRO3102Q9H379 93 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 DISC1Q9NRI5 854 aa15.83■□□□□ 0.12
LDB3-204ENST00000372066 GINM1Q9NU53 330 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms