RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 KATNAL1Q9BW62 490 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 SUGCTQ9HAC7 445 aa16.25■□□□□ 0.19
VPS29-201ENST00000360579 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.24■□□□□ 0.19
VPS29-201ENST00000360579 PRR33A8MZF0 331 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 SNHG28P0DPA3 235 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 PCP11498 1178 aaKnown RBP16.24■□□□□ 0.19
VPS29-201ENST00000360579 CKBP12277 381 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 MX1P20591 662 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 GPNMBQ14956 572 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 LEXMQ3ZCV2 418 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 VPS53Q5VIR6 699 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 GJD3Q8N144 294 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 NSUN6Q8TEA1 469 aaKnown RBP16.24■□□□□ 0.19
VPS29-201ENST00000360579 KHSRPQ92945 711 aaKnown RBP eCLIP16.24■□□□□ 0.196e-11■□□□□ 11.2
VPS29-201ENST00000360579 IWS1Q96ST2 819 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 HELLSQ9NRZ9 838 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 GTF2IRD1Q9UHL9 959 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 MTUS1Q9ULD2 1270 aa16.24■□□□□ 0.19
VPS29-201ENST00000360579 LINC01553A4QN01 128 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 FAM86C2PA6NEL3 165 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 NBNO60934 754 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 ARHGAP1Q07960 439 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 PTK7Q13308 1070 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 STXBP2Q15833 593 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 PUS10Q3MIT2 529 aaKnown RBP16.23■□□□□ 0.19
VPS29-201ENST00000360579 USH1GQ495M9 461 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 SEPT14Q6ZU15 432 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 TMCO2Q7Z6W1 182 aaPredicted RBP16.23■□□□□ 0.19
VPS29-201ENST00000360579 FAM178BQ8IXR5 827 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 MIER1Q8N108 512 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 DHX38Q92620 1227 aaKnown RBP16.23■□□□□ 0.19
VPS29-201ENST00000360579 KAT2BQ92831 832 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 EMID1Q96A84 441 aaPredicted RBP16.23■□□□□ 0.19
VPS29-201ENST00000360579 EVI5LQ96CN4 794 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 CTNNA3Q9UI47 895 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 INSL6Q9Y581 213 aa16.23■□□□□ 0.19
VPS29-201ENST00000360579 COL4A4P53420 1690 aaPredicted RBP16.23■□□□□ 0.19
VPS29-201ENST00000360579 TET1Q8NFU7 2136 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 ZMYM6O95789 1325 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 FGAP02671 866 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 ALADP13716 330 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 LY6KQ17RY6 165 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 CHST3Q7LGC8 479 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 TICAM2Q86XR7 235 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 MCF2L2Q86YR7 1114 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 CD320Q9NPF0 282 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 HDAC6Q9UBN7 1215 aa16.22■□□□□ 0.19
VPS29-201ENST00000360579 MUC6Q6W4X9 2439 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 ABCB11O95342 1321 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 EMSYQ7Z589 1322 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 BRWD1Q9NSI6 2320 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 KCNA5P22460 613 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 SSTR3P32745 418 aaPredicted RBP16.21■□□□□ 0.19
VPS29-201ENST00000360579 PSEN2P49810 448 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 NT5C2P49902 561 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 PTPROQ16827 1216 aa16.21■□□□□ 0.19
VPS29-201ENST00000360579 SYTL5Q8TDW5 730 aaPredicted RBP16.21■□□□□ 0.19
VPS29-201ENST00000360579 OTUD7AQ8TE49 926 aaPredicted RBP16.21■□□□□ 0.19
VPS29-201ENST00000360579 ZBTB47Q9UFB7 747 aaPredicted RBP16.21■□□□□ 0.19
VPS29-201ENST00000360579 LGR5O75473 907 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 EIF3JO75822 258 aaKnown RBP16.2■□□□□ 0.18
VPS29-201ENST00000360579 F2P00734 622 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 AMHP03971 560 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 LAMC2Q13753 1193 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 MFSD10Q14728 455 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 KIAA0753Q2KHM9 967 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 MCMDC2Q4G0Z9 681 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 PTCRAQ6ISU1 281 aaPredicted RBP16.2■□□□□ 0.18
VPS29-201ENST00000360579 MFSD6Q6ZSS7 791 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 FBXO22Q8NEZ5 403 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 PPTC7Q8NI37 304 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.2■□□□□ 0.18
VPS29-201ENST00000360579 SAMD11Q96NU1 681 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 RMDN3Q96TC7 470 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 ALG1Q9BT22 464 aa16.2■□□□□ 0.18
VPS29-201ENST00000360579 RNF41Q9H4P4 317 aaPredicted RBP16.2■□□□□ 0.18
VPS29-201ENST00000360579 DDX41Q9UJV9 622 aaKnown RBP16.2■□□□□ 0.18
VPS29-201ENST00000360579 CDC37Q16543 378 aaPredicted RBP16.19■□□□□ 0.18
VPS29-201ENST00000360579 CSPP1Q1MSJ5 1256 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 TIGD5Q53EQ6 642 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 CCDC178Q5BJE1 867 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 ZNF618Q5T7W0 954 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 FAM117BQ6P1L5 589 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 DGKHQ86XP1 1220 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 ESR2Q92731 530 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 MRPL38Q96DV4 380 aaKnown RBP16.19■□□□□ 0.18
VPS29-201ENST00000360579 TAAR1Q96RJ0 339 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 FAM50BQ9Y247 325 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 MRPL11Q9Y3B7 192 aaKnown RBP16.19■□□□□ 0.18
VPS29-201ENST00000360579 MRVI1Q9Y6F6 885 aa16.19■□□□□ 0.18
VPS29-201ENST00000360579 PTPRSQ13332 1948 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 GRXCR2A6NFK2 248 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 HAS3O00219 553 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 GOLGA8HP0CJ92 632 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 HSPD1P10809 573 aaKnown RBP16.18■□□□□ 0.18
VPS29-201ENST00000360579 TCTN1Q2MV58 587 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 TRIM71Q2Q1W2 868 aaKnown RBP16.18■□□□□ 0.18
VPS29-201ENST00000360579 ARHGEF16Q5VV41 709 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 TRAF7Q6Q0C0 670 aa16.18■□□□□ 0.18
VPS29-201ENST00000360579 DHX37Q8IY37 1157 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms