RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 IGLV3-22A0A075B6J6 115 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 A0A1B0GVL5 298 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 CNTN2Q02246 1040 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 NOGQ13253 232 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 FAM110CQ1W6H9 321 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 WDR78Q5VTH9 848 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 PCNX4Q63HM2 1172 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 NSUN6Q8TEA1 469 aaKnown RBP22.53■■□□□ 1.2
CLN3-205ENST00000359984 HAS1Q92839 578 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 CPA4Q9UI42 421 aa22.53■■□□□ 1.2
CLN3-205ENST00000359984 AOC2O75106 756 aa22.52■■□□□ 1.2
CLN3-205ENST00000359984 CEP55Q53EZ4 464 aa22.52■■□□□ 1.2
CLN3-205ENST00000359984 MMP19Q99542 508 aa22.52■■□□□ 1.2
CLN3-205ENST00000359984 KCNMB3Q9NPA1 279 aa22.52■■□□□ 1.2
CLN3-205ENST00000359984 POTEB2H3BUK9 544 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 TXKP42681 527 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 NDUFA8P51970 172 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 MRPS9P82933 396 aaKnown RBP22.51■■□□□ 1.19
CLN3-205ENST00000359984 CCDC73Q6ZRK6 1079 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 NR1I2O75469 434 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 BCRP11274 1271 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 FCER1AP12319 257 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 PFKFB1P16118 471 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 KCTD2Q14681 263 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 CAVIN1Q6NZI2 390 aaKnown RBP22.51■■□□□ 1.19
CLN3-205ENST00000359984 USP49Q70CQ1 688 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 FAM133AQ8N9E0 248 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 ENGASEQ8NFI3 743 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 ETNPPLQ8TBG4 499 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 GJA10Q969M2 543 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 UIMC1Q96RL1 719 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 DACT1Q9NYF0 836 aa22.51■■□□□ 1.19
CLN3-205ENST00000359984 ASTN1O14525 1302 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 FAM237AA0A1B0GTK4 181 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 MEIS1O00470 390 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 TLR2O60603 784 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 NR3C2P08235 984 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 MYCLP12524 364 aaPredicted RBP22.5■■□□□ 1.19
CLN3-205ENST00000359984 ITGB5P18084 799 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 LONP1P36776 959 aaKnown RBP22.5■■□□□ 1.19
CLN3-205ENST00000359984 SNW1Q13573 536 aaKnown RBP22.5■■□□□ 1.19
CLN3-205ENST00000359984 VSIG10LQ86VR7 867 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 PLA2G4DQ86XP0 818 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 DNERQ8NFT8 737 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 MXRA8Q9BRK3 442 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 ZFYVE28Q9HCC9 887 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 HPSEQ9Y251 543 aa22.5■■□□□ 1.19
CLN3-205ENST00000359984 SOWAHBA6NEL2 793 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 MARCH6O60337 910 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 TECP42680 631 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 FAM160A1Q05DH4 1040 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 XRRA1Q6P2D8 792 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 FMR1NBQ8N0W7 255 aaPredicted RBP22.49■■□□□ 1.19
CLN3-205ENST00000359984 EPSTI1Q96J88 318 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 TMEM63CQ9P1W3 806 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 UBIAD1Q9Y5Z9 338 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 LCTP09848 1927 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 DNAJC25-GNG10A0A024R161 153 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 TBX3O15119 743 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 MSH4O15457 936 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 PGK2P07205 417 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 CCND2P30279 289 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 C17orf99Q6UX52 265 aa22.49■■□□□ 1.19
CLN3-205ENST00000359984 SYMPKQ92797 1274 aaKnown RBP22.49■■□□□ 1.19
CLN3-205ENST00000359984 FXR2P51116 673 aaKnown RBP eCLIP22.48■■□□□ 1.19
CLN3-205ENST00000359984 CRHR2Q13324 411 aa22.48■■□□□ 1.19
CLN3-205ENST00000359984 NIPA1Q7RTP0 329 aa22.48■■□□□ 1.19
CLN3-205ENST00000359984 SLFN12Q8IYM2 578 aa22.48■■□□□ 1.19
CLN3-205ENST00000359984 TTC12Q9H892 705 aaPredicted RBP22.48■■□□□ 1.19
CLN3-205ENST00000359984 FAM13BQ9NYF5 915 aa22.48■■□□□ 1.19
CLN3-205ENST00000359984 KCNH3Q9ULD8 1083 aa22.48■■□□□ 1.19
CLN3-205ENST00000359984 CA12O43570 354 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 ARP10275 920 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 ALDH5A1P51649 535 aaPredicted RBP22.47■■□□□ 1.19
CLN3-205ENST00000359984 IGSF22Q8N9C0 903 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 FAM20AQ96MK3 541 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 IWS1Q96ST2 819 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 CDC25AP30304 524 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 SETQ01105 290 aaPredicted RBP22.47■■□□□ 1.19
CLN3-205ENST00000359984 TMEM266Q2M3C6 531 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 WDR11Q9BZH6 1224 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 JADE2Q9NQC1 790 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 ADD3Q9UEY8 706 aaKnown RBP22.47■■□□□ 1.19
CLN3-205ENST00000359984 PCDHA12Q9UN75 941 aa22.47■■□□□ 1.19
CLN3-205ENST00000359984 PP2D1A8MPX8 630 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 STRNO43815 780 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 MAPK4P31152 587 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 SYKP43405 635 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 HTRA3P83110 453 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 PDIA5Q14554 519 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 GPR142Q7Z601 462 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 ABRAQ8N0Z2 381 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 FGD4Q96M96 766 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 AK8Q96MA6 479 aa22.46■■□□□ 1.19
CLN3-205ENST00000359984 GZF1Q9H116 711 aaPredicted RBP22.46■■□□□ 1.19
CLN3-205ENST00000359984 ZNF202O95125 648 aa22.45■■□□□ 1.19
CLN3-205ENST00000359984 REM2Q8IYK8 340 aaPredicted RBP22.45■■□□□ 1.19
CLN3-205ENST00000359984 PANK2Q9BZ23 570 aa22.45■■□□□ 1.19
CLN3-205ENST00000359984 DDX19AQ9NUU7 478 aaKnown RBP22.45■■□□□ 1.19
CLN3-205ENST00000359984 IVNS1ABPQ9Y6Y0 642 aa22.45■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms