RNA–Protein interactions for RNA: ENST00000357806.11

CLN3-203, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,469 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-203ENST00000357806 IL31RAQ8NI17 732 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 A0A1W2PQ45 241 aaPredicted RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 A0A1W2PQY0 241 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 SMCO2A6NFE2 343 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 DYNC1LI2O43237 492 aaPredicted RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 PFKFB2O60825 505 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 STAM2O75886 525 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 CDKL5O76039 1030 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 TXNP10599 105 aaKnown RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 ACLYP53396 1101 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 SSRP1Q08945 709 aaKnown RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 KCNA10Q16322 511 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 PKN1Q16512 942 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 FSCN1Q16658 493 aaKnown RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 TMEM63BQ5T3F8 832 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 CCSAPQ6IQ19 270 aaPredicted RBP19.48■□□□□ 0.71
CLN3-203ENST00000357806 OR6J1Q8NGC5 347 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 EHMT1Q9H9B1 1298 aa19.48■□□□□ 0.71
CLN3-203ENST00000357806 ESYT2A0FGR8 921 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 CTAGE5O15320 804 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 PPFIA3O75145 1194 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 ARIH2O95376 493 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 ASGR1P07306 291 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 PTGS1P23219 599 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 IRX5P78411 483 aaPredicted RBP19.47■□□□□ 0.71
CLN3-203ENST00000357806 LRRC26Q2I0M4 334 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 CCDC148Q8NFR7 591 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 FERMT2Q96AC1 680 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 NR2E3Q9Y5X4 410 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 MRVI1Q9Y6F6 885 aa19.47■□□□□ 0.71
CLN3-203ENST00000357806 SCN10AQ9Y5Y9 1956 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 LTBP2Q14767 1821 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 ZEB2O60315 1214 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 DEXIO95424 95 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 CPT1AP50416 773 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 ATN1P54259 1190 aaPredicted RBP19.46■□□□□ 0.71
CLN3-203ENST00000357806 BEX3Q00994 111 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 GNPTABQ3T906 1256 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 PCNX4Q63HM2 1172 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 XRRA1Q6P2D8 792 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 CCDC62Q6P9F0 684 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 KCNV1Q6PIU1 500 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 GLT1D1Q96MS3 346 aa19.46■□□□□ 0.71
CLN3-203ENST00000357806 AP3B2Q13367 1082 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 PRPF38BQ5VTL8 546 aaKnown RBP19.45■□□□□ 0.7
CLN3-203ENST00000357806 SLC39A5Q6ZMH5 540 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 KIF2CQ99661 725 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 ZMYND12Q9H0C1 365 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 C6orf50Q9HD87 102 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 STARD7Q9NQZ5 370 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 PCDHA6Q9UN73 950 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 PCDHA8Q9Y5H6 950 aa19.45■□□□□ 0.7
CLN3-203ENST00000357806 RGS20O76081 388 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 FOSP01100 380 aaPredicted RBP19.44■□□□□ 0.7
CLN3-203ENST00000357806 GH1P01241 217 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 GNA11P29992 359 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 MRPS9P82933 396 aaKnown RBP19.44■□□□□ 0.7
CLN3-203ENST00000357806 SNX17Q15036 470 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 ME3Q16798 604 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 LY6KQ17RY6 165 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 BRDTQ58F21 947 aaPredicted RBP19.44■□□□□ 0.7
CLN3-203ENST00000357806 C7orf61Q8IZ16 206 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 COPS5Q92905 334 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 SH3GLB2Q9NR46 395 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 DDX41Q9UJV9 622 aaKnown RBP19.44■□□□□ 0.7
CLN3-203ENST00000357806 STK36Q9NRP7 1315 aa19.44■□□□□ 0.7
CLN3-203ENST00000357806 TGFB3P10600 412 aa19.43■□□□□ 0.7
CLN3-203ENST00000357806 CLK2P49760 499 aaKnown RBP19.43■□□□□ 0.7
CLN3-203ENST00000357806 RTP1P59025 263 aa19.43■□□□□ 0.7
CLN3-203ENST00000357806 C1orf53Q5VUE5 145 aa19.43■□□□□ 0.7
CLN3-203ENST00000357806 GTF3C6Q969F1 213 aa19.43■□□□□ 0.7
CLN3-203ENST00000357806 INPP4AQ96PE3 977 aaPredicted RBP19.43■□□□□ 0.7
CLN3-203ENST00000357806 VPS54Q9P1Q0 977 aa19.43■□□□□ 0.7
CLN3-203ENST00000357806 ELP1O95163 1332 aa19.43■□□□□ 0.7
CLN3-203ENST00000357806 CABYRO75952 493 aa19.42■□□□□ 0.7
CLN3-203ENST00000357806 LARGE1O95461 756 aa19.42■□□□□ 0.7
CLN3-203ENST00000357806 MCTP2Q6DN12 878 aa19.42■□□□□ 0.7
CLN3-203ENST00000357806 REXO1Q8N1G1 1221 aaKnown RBP19.42■□□□□ 0.7
CLN3-203ENST00000357806 BICD2Q8TD16 824 aa19.42■□□□□ 0.7
CLN3-203ENST00000357806 ZFP91Q96JP5 570 aaPredicted RBP19.42■□□□□ 0.7
CLN3-203ENST00000357806 ANO3Q9BYT9 981 aa19.42■□□□□ 0.7
CLN3-203ENST00000357806 POLR3EQ9NVU0 708 aa19.42■□□□□ 0.7
CLN3-203ENST00000357806 FIBPO43427 364 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 ARHGAP1Q07960 439 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 RABEP1Q15276 862 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 CXCL17Q6UXB2 119 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 NLRX1Q86UT6 975 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 EMID1Q96A84 441 aaPredicted RBP19.41■□□□□ 0.7
CLN3-203ENST00000357806 RTEL1Q9NZ71 1219 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 LIMCH1Q9UPQ0 1083 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 ATP11BQ9Y2G3 1177 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 A0A0U1RQG5 324 aaPredicted RBP19.41■□□□□ 0.7
CLN3-203ENST00000357806 A6NJR5 290 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 ICAM3P32942 547 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 TRIM60Q495X7 471 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 FAM177A1Q8N128 213 aaPredicted RBP19.41■□□□□ 0.7
CLN3-203ENST00000357806 NECAB1Q8N987 351 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 VTI1AQ96AJ9 217 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 PGBD1Q96JS3 809 aa19.41■□□□□ 0.7
CLN3-203ENST00000357806 TMEM260Q9NX78 707 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms