RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 LRRFIP2Q9Y608 721 aaKnown RBP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 COL2A1P02458 1487 aaPredicted RBP8.43□□□□□ -1.06
VPS13A-201ENST00000355766 LINC01387J3KSC0 135 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 SCNN1AP37088 669 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 MAGEA10P43363 369 aaPredicted RBP8.42□□□□□ -1.06
VPS13A-201ENST00000355766 MOGSQ13724 837 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 C8orf34Q49A92 452 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 ADAMTSL4Q6UY14 1074 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 Q6ZS46 218 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 PBXIP1Q96AQ6 731 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 HOOK2Q96ED9 719 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 SPACA7Q96KW9 195 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 LRRCC1Q9C099 1032 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 SEPT3Q9UH03 358 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 RNF112Q9ULX5 631 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 ALPK3Q96L96 1907 aa8.42□□□□□ -1.06
VPS13A-201ENST00000355766 ANKRD18BA2A2Z9 1011 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 CYP2E1P05181 493 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-201ENST00000355766 NBPF7P0C2Y1 421 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-201ENST00000355766 SYN1P17600 705 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 FLT3LGP49771 235 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 RGS3P49796 1198 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 CACNB3P54284 484 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 CASP7P55210 303 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 ANKRD45Q5TZF3 282 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 DCAF15Q66K64 600 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 TXNDC11Q6PKC3 985 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 FAM83AQ86UY5 434 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 TICAM2Q86XR7 235 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 TDRD7Q8NHU6 1098 aaKnown RBP8.41□□□□□ -1.06
VPS13A-201ENST00000355766 KIF1BPQ96EK5 621 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 GUCD1Q96NT3 240 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 ZMYND15Q9H091 742 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.41□□□□□ -1.06
VPS13A-201ENST00000355766 RASSF4Q9H2L5 321 aa8.41□□□□□ -1.06
VPS13A-201ENST00000355766 ABI2Q9NYB9 513 aaPredicted RBP8.41□□□□□ -1.06
VPS13A-201ENST00000355766 SALL3Q9BXA9 1300 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 TNPO2O14787 897 aaKnown RBP8.4□□□□□ -1.06
VPS13A-201ENST00000355766 SRGAP3O43295 1099 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 SMNDC1O75940 238 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS13A-201ENST00000355766 KIF4AO95239 1232 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 CYP2C8P10632 490 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 GLB1P16278 677 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 CDC27P30260 824 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 FAM109BQ6ICB4 259 aaPredicted RBP8.4□□□□□ -1.06
VPS13A-201ENST00000355766 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.4□□□□□ -1.06
VPS13A-201ENST00000355766 ZNF341Q9BYN7 854 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 LNPKQ9C0E8 428 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 UPF2Q9HAU5 1272 aaKnown RBP8.4□□□□□ -1.06
VPS13A-201ENST00000355766 COPRSQ9NQ92 184 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 TMOD2Q9NZR1 351 aa8.4□□□□□ -1.06
VPS13A-201ENST00000355766 PNMA6EA0A0J9YXQ4 647 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-201ENST00000355766 TM4SF5O14894 197 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 WISP1O95388 367 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 FSTP19883 344 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 CDC25BP30305 580 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 ANP32AP39687 249 aaKnown RBP8.39□□□□□ -1.07
VPS13A-201ENST00000355766 HDLBPQ00341 1268 aaKnown RBP8.39□□□□□ -1.07
VPS13A-201ENST00000355766 IFIT5Q13325 482 aaKnown RBP8.39□□□□□ -1.07
VPS13A-201ENST00000355766 NOL9Q5SY16 702 aaKnown RBP8.39□□□□□ -1.07
VPS13A-201ENST00000355766 FKBP1CQ5VVH2 108 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 ATCAYQ86WG3 371 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 CEP120Q8N960 986 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 TEKT1Q969V4 418 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 UBL7Q96S82 380 aaPredicted RBP8.39□□□□□ -1.07
VPS13A-201ENST00000355766 KRTAP9-2Q9BYQ4 174 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 KCNK4Q9NYG8 393 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 TMEM63CQ9P1W3 806 aa8.39□□□□□ -1.07
VPS13A-201ENST00000355766 DDX60LQ5H9U9 1706 aaKnown RBP8.38□□□□□ -1.07
VPS13A-201ENST00000355766 TTC41PQ6P2S7 1318 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 EPB41L2O43491 1005 aaKnown RBP8.38□□□□□ -1.07
VPS13A-201ENST00000355766 HMGCRP04035 888 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 HIBADHP31937 336 aaKnown RBP8.38□□□□□ -1.07
VPS13A-201ENST00000355766 CD68P34810 354 aaPredicted RBP8.38□□□□□ -1.07
VPS13A-201ENST00000355766 GYG1P46976 350 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 TTC22Q5TAA0 569 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 GPATCH3Q96I76 525 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 ZDHHC15Q96MV8 337 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 PBX4Q9BYU1 374 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 C11orf49Q9H6J7 331 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 ZNF112Q9UJU3 913 aa8.38□□□□□ -1.07
VPS13A-201ENST00000355766 EYSQ5T1H1 3165 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 PFASO15067 1338 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 MAST3O60307 1309 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 A0A0G2JLL6 359 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 CXCL11O14625 94 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 CIAO1O76071 339 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 MX1P20591 662 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 FOXO4P98177 505 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 UBE4AQ14139 1066 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 PDE12Q6L8Q7 609 aaKnown RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 CASC1Q6TDU7 716 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 MIGA2Q7L4E1 593 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 PRRT2Q7Z6L0 340 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 NCAPG2Q86XI2 1143 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 CCDC97Q96F63 343 aaPredicted RBP8.37□□□□□ -1.07
VPS13A-201ENST00000355766 KAZALD1Q96I82 304 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 SUCLG2Q96I99 432 aa8.37□□□□□ -1.07
VPS13A-201ENST00000355766 FAM84BQ96KN1 310 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms