RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 FAM25CB3EWG5 89 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 FAM25GB3EWG6 89 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 POLR2BP30876 1174 aaKnown RBP13.62□□□□□ -0.23
COL6A3-203ENST00000353578 AOC3Q16853 763 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 STX19Q8N4C7 294 aa13.62□□□□□ -0.23
COL6A3-203ENST00000353578 GOLGA8IPA6NC78 632 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 JPH4Q96JJ6 628 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 HAUS7Q99871 368 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 GRM8O00222 908 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 LIN7AO14910 233 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 CLASP2O75122 1294 aaKnown RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 SEC31AO94979 1220 aaKnown RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 DSG1Q02413 1049 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 SLC35F6Q8N357 371 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 ETNK1Q9HBU6 452 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 ANXA13P27216 316 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 GGCXP38435 758 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 LUZP2Q86TE4 346 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 FOXP3Q9BZS1 431 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 HGSO14964 777 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 PDE5AO76074 875 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 CARSP49589 748 aaKnown RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 RASA3Q14644 834 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 SMG5Q9UPR3 1016 aaKnown RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 PRAG1Q86YV5 1406 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 PFKFB2O60825 505 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 GADD45BO75293 160 aaPredicted RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 HOXB7P09629 217 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 PSMA4P25789 261 aaKnown RBP13.61□□□□□ -0.23
COL6A3-203ENST00000353578 ZBED6P86452 979 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 NUGGCQ68CJ6 796 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 NCAPG2Q86XI2 1143 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 TNIP2Q8NFZ5 429 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 ECT2Q9H8V3 914 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 PRR23AA6NEV1 266 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 PPP6R2O75170 966 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 VHLP40337 213 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 B4GALNT2Q8NHY0 566 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 RWDD2AQ9UIY3 292 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 DUOX2Q9NRD8 1548 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 RASSF7Q02833 373 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 CMTM5Q96DZ9 223 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 AK8Q96MA6 479 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 SLITRK6Q9H5Y7 841 aa13.61□□□□□ -0.23
COL6A3-203ENST00000353578 MYH8P13535 1937 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 PPP1R37O75864 691 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 KRT38O76015 456 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 PCP11498 1178 aaKnown RBP13.6□□□□□ -0.23
COL6A3-203ENST00000353578 CCDC8Q9H0W5 538 aaPredicted RBP13.6□□□□□ -0.23
COL6A3-203ENST00000353578 ZFATQ9P243 1243 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 ATP8A1Q9Y2Q0 1164 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 TAB2Q9NYJ8 693 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 PLAAQ9Y263 795 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 SHANK2Q9UPX8 1470 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 BEND3Q5T5X7 828 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 NLRP9Q7RTR0 991 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 AFG3L2Q9Y4W6 797 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 TRPC7Q9HCX4 862 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 UGGT2Q9NYU1 1516 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 BYSLQ13895 437 aaKnown RBP13.6□□□□□ -0.23
COL6A3-203ENST00000353578 ATP2B3Q16720 1220 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 KLHL38Q2WGJ6 581 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 PPP4R3CPQ6ZMV5 832 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 CDC37L1Q7L3B6 337 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 CLMNQ96JQ2 1002 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 DNMT1P26358 1616 aaKnown RBP13.6□□□□□ -0.23
COL6A3-203ENST00000353578 MORF4L2Q15014 288 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 NOSTRINQ8IVI9 506 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 FBXL13Q8NEE6 735 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 ALKBH8Q96BT7 664 aaKnown RBP13.6□□□□□ -0.23
COL6A3-203ENST00000353578 HMGXB3Q12766 1538 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 PFKFB1P16118 471 aa13.6□□□□□ -0.23
COL6A3-203ENST00000353578 ZCRB1Q8TBF4 217 aaKnown RBP13.6□□□□□ -0.23
COL6A3-203ENST00000353578 SLC27A2O14975 620 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 ECE1P42892 770 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 ARMCX6Q7L4S7 300 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 TRAPPC9Q96Q05 1148 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 ARMCX3Q9UH62 379 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 SETD1BQ9UPS6 1966 aaKnown RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 KAT6AQ92794 2004 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 IFNAR2P48551 515 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 ITIH4Q14624 930 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CDC37Q16543 378 aaPredicted RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 ACAD11Q709F0 780 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 KDM4CQ9H3R0 1056 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CCDC87Q9NVE4 849 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CABP1Q9NZU7 370 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 TRPC6Q9Y210 931 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 HAUS5O94927 633 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 LAMC2Q13753 1193 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 AGBL2Q5U5Z8 902 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 CADPS2Q86UW7 1296 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 C17orf50Q8WW18 174 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 UBAP1Q9NZ09 502 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 SBNO1A3KN83 1393 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 HSPA1AP0DMV8 641 aaKnown RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 HSPA1BP0DMV9 641 aaKnown RBP13.59□□□□□ -0.23
COL6A3-203ENST00000353578 ATF3P18847 181 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 KAZNQ674X7 775 aa13.59□□□□□ -0.23
COL6A3-203ENST00000353578 RASSF3Q86WH2 238 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms