RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 USP17L18D6R9N7 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L22D6RA61 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L17D6RBQ6 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L19D6RCP7 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L20D6RJB6 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 SASH3O75995 380 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 MMP10P09238 476 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 EEF2P13639 858 aaKnown RBP24.24■■□□□ 1.47
SHMT1-202ENST00000352886 AMPD2Q01433 879 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L24Q0WX57 530 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 TERF2Q15554 542 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 QRICH1Q2TAL8 776 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 VWA3BQ502W6 1294 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 USP17L6PQ6QN14 398 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 KIAA1328Q86T90 577 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 ANKZF1Q9H8Y5 726 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 MYO6Q9UM54 1294 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 ATF5Q9Y2D1 282 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-202ENST00000352886 A0A1W2PQJ5 194 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 DDTLA6NHG4 134 aaPredicted RBP24.24■■□□□ 1.47
SHMT1-202ENST00000352886 SLC1A4P43007 532 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 EHHADHQ08426 723 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 GLIS3Q8NEA6 775 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 ZNF622Q969S3 477 aaKnown RBP eCLIP24.24■■□□□ 1.47
SHMT1-202ENST00000352886 NDST4Q9H3R1 872 aa24.24■■□□□ 1.47
SHMT1-202ENST00000352886 CCDC151A5D8V7 595 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 RBM5P52756 815 aaKnown RBP eCLIP24.23■■□□□ 1.47
SHMT1-202ENST00000352886 LRRC63Q05C16 580 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 LRRC41Q15345 812 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 CCDC170Q8IYT3 715 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 UIMC1Q96RL1 719 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 PCDHA1Q9Y5I3 950 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 PSMD14O00487 310 aa24.23■■□□□ 1.47
SHMT1-202ENST00000352886 CERKLQ49MI3 558 aaPredicted RBP24.23■■□□□ 1.47
SHMT1-202ENST00000352886 DHX36Q9H2U1 1008 aaKnown RBP24.23■■□□□ 1.47
SHMT1-202ENST00000352886 SCN9AQ15858 1988 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 CTAGE15A4D2H0 777 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 IPO7O95373 1038 aaKnown RBP24.22■■□□□ 1.47
SHMT1-202ENST00000352886 FGFR1OPO95684 399 aaKnown RBP24.22■■□□□ 1.47
SHMT1-202ENST00000352886 CTAGE8P0CG41 777 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 PSMD2Q13200 908 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 CTAGE6Q86UF2 777 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 CTAGE4Q8IX94 777 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 JAKMIP2Q96AA8 810 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 EIF3CLB5ME19 914 aaKnown RBP24.22■■□□□ 1.47
SHMT1-202ENST00000352886 ENC1O14682 589 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 HMGB2P26583 209 aaKnown RBP24.22■■□□□ 1.47
SHMT1-202ENST00000352886 MAN2A1Q16706 1144 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 SLFN13Q68D06 897 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 DNAJC19Q96DA6 116 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 EIF3CQ99613 913 aaKnown RBP24.22■■□□□ 1.47
SHMT1-202ENST00000352886 PI4KBQ9UBF8 816 aa24.22■■□□□ 1.47
SHMT1-202ENST00000352886 KRT86O43790 486 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 BRD3Q15059 726 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 CDC37Q16543 378 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-202ENST00000352886 ZNF662Q6ZS27 426 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 MKL1Q969V6 931 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 AKT1S1Q96B36 256 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 NAP1L4Q99733 375 aaKnown RBP24.21■■□□□ 1.47
SHMT1-202ENST00000352886 KANSL2Q9H9L4 492 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 FAM198AQ9UFP1 575 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 SIK3Q9Y2K2 1263 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 SSBP05455 408 aaKnown RBP eCLIP24.21■■□□□ 1.47
SHMT1-202ENST00000352886 TUBB4BP68371 445 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 COASYQ13057 564 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 NCAPH2Q6IBW4 605 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 LRRC55Q6ZSA7 311 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 ZNF771Q7L3S4 317 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-202ENST00000352886 MSANTD4Q8NCY6 345 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 DCAF4Q8WV16 495 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 FAM207AQ9NSI2 230 aaPredicted RBP24.21■■□□□ 1.47
SHMT1-202ENST00000352886 NYAP2Q9P242 653 aa24.21■■□□□ 1.47
SHMT1-202ENST00000352886 ABCB11O95342 1321 aa24.2■■□□□ 1.47
SHMT1-202ENST00000352886 KDM3AQ9Y4C1 1321 aa24.2■■□□□ 1.47
SHMT1-202ENST00000352886 RCCD1A6NED2 376 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 POTEB2H3BUK9 544 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 ERCC3P19447 782 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 CDK17Q00537 523 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 IQCDQ96DY2 449 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 PNKPQ96T60 521 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 LACRTQ9GZZ8 138 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 NT5C3AQ9H0P0 336 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 GLT8D2Q9H1C3 349 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 GOLGB1Q14789 3259 aaKnown RBP24.2■■□□□ 1.46
SHMT1-202ENST00000352886 EPHB6O15197 1021 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 LONRF2Q1L5Z9 754 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 HYIQ5T013 277 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 SH3BP5LQ7L8J4 393 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 TRAPPC11Q7Z392 1133 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 MYOCDQ8IZQ8 938 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 TSG101Q99816 390 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 TRIM34Q9BYJ4 488 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 ANO3Q9BYT9 981 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 HDAC6Q9UBN7 1215 aa24.2■■□□□ 1.46
SHMT1-202ENST00000352886 HOXA7P31268 230 aaPredicted RBP24.19■■□□□ 1.46
SHMT1-202ENST00000352886 CYP27A1Q02318 531 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 SEPT2Q15019 361 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 STRIP1Q5VSL9 837 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 EHBP1Q8NDI1 1231 aa24.19■■□□□ 1.46
SHMT1-202ENST00000352886 IDI2Q9BXS1 227 aa24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms