RNA–Protein interactions for RNA: ENST00000349748.7

CAPN3-203, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 2,955 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-203ENST00000349748 SUN2Q9UH99 717 aa11.7□□□□□ -0.54
CAPN3-203ENST00000349748 MED1Q15648 1581 aaPredicted RBP11.7□□□□□ -0.54
CAPN3-203ENST00000349748 KCNQ3O43525 872 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 HIP1RO75146 1068 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 GFPT2O94808 682 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 PAEPP09466 180 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 SPATA31D3P0C874 917 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 RAD23BP54727 409 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 RNASELQ05823 741 aaKnown RBP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 DPYDQ12882 1025 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 NT5DC1Q5TFE4 455 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 CC2D2BQ6DHV5 1058 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 SPATA31D4Q6ZUB0 917 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 CCNJLQ8IV13 435 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 C1orf131Q8NDD1 294 aaKnown RBP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 MAP3K14Q99558 947 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 SDAD1Q9NVU7 687 aaKnown RBP eCLIP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 AFF2P51816 1311 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 PI4KAP2A4QPH2 592 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 MOCS3O95396 460 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 ATP6V1C1P21283 382 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 PSMC4P43686 418 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 LACTBP83111 547 aaPredicted RBP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 CUL4BQ13620 913 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 UAP1Q16222 522 aaPredicted RBP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 INF2Q27J81 1249 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 SEPT14Q6ZU15 432 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 KRT26Q7Z3Y9 468 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 PI4KAP1Q8N8J0 262 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 SLC35B4Q969S0 331 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 XPO6Q96QU8 1125 aaKnown RBP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.69□□□□□ -0.54
CAPN3-203ENST00000349748 SPATA7Q9P0W8 599 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 CHPF2Q9P2E5 772 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 CD2APQ9Y5K6 639 aa11.69□□□□□ -0.54
CAPN3-203ENST00000349748 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 H0YGN5 161 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 CTNNA1P35221 906 aaKnown RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 AFMP43652 599 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 KRT83P78385 493 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 UBXN1Q04323 297 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 GPIHBP1Q8IV16 184 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 LRRC34Q8IZ02 419 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 C17orf50Q8WW18 174 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 DMAP1Q9NPF5 467 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 LRWD1Q9UFC0 647 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 NFS1Q9Y697 457 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 NFAT5O94916 1531 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 ABLIM1O14639 778 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 HNRNPRO43390 633 aaKnown RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 GNAZP19086 355 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 SERPINB4P48594 390 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 RNASE9P60153 205 aaKnown RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 HLTFQ14527 1009 aaKnown RBP eCLIP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 SEPT2Q15019 361 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 USP49Q70CQ1 688 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 ZNF572Q7Z3I7 529 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 ZNF274Q96GC6 653 aaPredicted RBP11.68□□□□□ -0.54
CAPN3-203ENST00000349748 PNMA3Q9UL41 463 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 CTNND2Q9UQB3 1225 aa11.68□□□□□ -0.54
CAPN3-203ENST00000349748 FLOT1O75955 427 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 NAT1P18440 290 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 COPB1P53618 953 aaKnown RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 ITIH3Q06033 890 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 P3H1Q32P28 736 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 TMEM110Q86TL2 294 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 ZNF317Q96PQ6 595 aaPredicted RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 PLCB1Q9NQ66 1216 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 TRPM3Q9HCF6 1732 aaPredicted RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 PAFAH1B1P43034 410 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 MCL1Q07820 350 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 CBX3Q13185 183 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 ERMARDQ5T6L9 678 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 RAPGEF4Q8WZA2 1011 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 KRT12Q99456 494 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 AGXT2Q9BYV1 514 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 LGR6Q9HBX8 967 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 TSKSQ9UJT2 592 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 LUC7L2Q9Y383 392 aaKnown RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 USH1CQ9Y6N9 552 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 PALM3A6NDB9 673 aaPredicted RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 E7EWF7 191 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 H0Y3Z8 333 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 CPLX1O14810 134 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 HSPA9P38646 679 aaKnown RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 CCNFP41002 786 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 KIF5AQ12840 1032 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 PABPC4Q13310 644 aaKnown RBP eCLIP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 TTF1Q15361 905 aaPredicted RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 TCERG1LQ5VWI1 586 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 PIGWQ7Z7B1 504 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 DZIP3Q86Y13 1208 aaKnown RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 APLFQ8IW19 511 aaPredicted RBP11.67□□□□□ -0.54
CAPN3-203ENST00000349748 FBF1Q8TES7 1133 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 FAM129AQ9BZQ8 928 aa11.67□□□□□ -0.54
CAPN3-203ENST00000349748 TMEM221A6NGB7 291 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 GOLGA8BA8MQT2 603 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 GNA14O95837 355 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 ETS2P15036 469 aa11.66□□□□□ -0.54
CAPN3-203ENST00000349748 PEX5P50542 639 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms